Manganese in PDB 7bmf: Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp

The structure of Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp, PDB code: 7bmf was solved by M.De March, S.Onesti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.21 / 2.20
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	53.75, 53.88, 86.72, 79.86, 82.77, 63.98
R / Rfree (%)	25.4 / 29.9

The binding sites of Manganese atom in the Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp (pdb code 7bmf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp, PDB code: 7bmf:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:24.1 occ:1.00 OD2 A:ASP94 2.1 17.2 1.0 O2A A:CTP503 2.2 24.2 1.0 ND1 A:HIS43 2.4 28.3 1.0 OD1 A:ASP45 2.4 17.0 1.0 OD2 A:ASP45 2.5 18.9 1.0 CG A:ASP45 2.8 18.2 1.0 CG A:ASP94 3.1 16.1 1.0 CE1 A:HIS43 3.2 28.7 1.0 PA A:CTP503 3.2 21.9 1.0 OD1 A:ASP94 3.3 14.8 1.0 MN A:MN502 3.3 17.6 1.0 CG A:HIS43 3.5 25.7 1.0 O5' A:CTP503 3.6 20.5 1.0 O1A A:CTP503 3.6 18.0 1.0 CB A:HIS43 3.8 23.0 1.0 C5' A:CTP503 4.1 24.0 1.0 CB A:ASP47 4.3 16.1 1.0 CB A:ASP45 4.3 18.5 1.0 NE2 A:HIS43 4.4 30.6 1.0 CB A:ASP94 4.4 18.2 1.0 OD1 A:ASP171 4.4 15.6 1.0 CD2 A:HIS43 4.5 26.3 1.0 O A:HOH655 4.5 17.8 1.0 N A:GLY48 4.6 18.5 1.0 O3' A:CTP503 4.6 27.1 1.0 OD2 A:ASP47 4.6 16.0 1.0 O3A A:CTP503 4.6 20.8 1.0 C3' A:CTP503 4.8 26.5 1.0 OD2 A:ASP171 4.8 14.2 1.0 CG A:ASP47 5.0 16.1 1.0

Manganese binding site 2 out of 4 in the Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn502 b:17.6 occ:1.00 O1A A:CTP503 2.2 18.0 1.0 OD2 A:ASP171 2.2 14.2 1.0 OD1 A:ASP94 2.2 14.8 1.0 NE2 A:HIS115 2.3 14.7 1.0 OD2 A:ASP47 2.4 16.0 1.0 CE1 A:HIS115 3.1 14.4 1.0 CG A:ASP94 3.2 16.1 1.0 CG A:ASP171 3.2 15.3 1.0 CG A:ASP47 3.3 16.1 1.0 MN A:MN501 3.3 24.1 1.0 PA A:CTP503 3.4 21.9 1.0 CD2 A:HIS115 3.4 14.4 1.0 OD2 A:ASP94 3.4 17.2 1.0 OD1 A:ASP171 3.5 15.6 1.0 CB A:ASP47 3.6 16.1 1.0 O2A A:CTP503 3.7 24.2 1.0 O5' A:CTP503 4.0 20.5 1.0 ND1 A:HIS115 4.3 14.0 1.0 NE2 A:HIS427 4.4 22.8 1.0 CE1 A:HIS116 4.4 21.7 1.0 CG A:HIS115 4.4 15.8 1.0 OD1 A:ASP47 4.5 16.7 1.0 N A:ALA145 4.5 16.3 1.0 CB A:ASP94 4.5 18.2 1.0 CB A:ASP171 4.6 15.5 1.0 CB A:ALA145 4.6 17.1 1.0 O3A A:CTP503 4.7 20.8 1.0 CB A:SER144 4.8 14.4 1.0 CE1 A:HIS427 4.9 23.0 1.0 NE2 A:HIS116 5.0 21.4 1.0

Manganese binding site 3 out of 4 in the Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:17.7 occ:1.00 OD2 B:ASP171 2.1 20.0 1.0 OD2 B:ASP47 2.2 15.7 1.0 OD1 B:ASP94 2.2 14.8 1.0 O2A B:CTP503 2.3 17.4 1.0 NE2 B:HIS115 2.4 18.0 1.0 CG B:ASP171 3.1 19.4 1.0 CG B:ASP94 3.2 15.3 1.0 CG B:ASP47 3.2 16.6 1.0 CE1 B:HIS115 3.3 16.6 1.0 MN B:MN502 3.4 22.9 1.0 CD2 B:HIS115 3.4 17.3 1.0 OD2 B:ASP94 3.4 13.5 1.0 PA B:CTP503 3.4 20.0 1.0 OD1 B:ASP171 3.5 20.7 1.0 CB B:ASP47 3.6 16.0 1.0 O1A B:CTP503 3.9 18.7 1.0 O5' B:CTP503 4.0 20.5 1.0 NE2 B:HIS427 4.3 24.5 1.0 N B:ALA145 4.4 14.4 1.0 OD1 B:ASP47 4.4 17.0 1.0 ND1 B:HIS115 4.4 17.2 1.0 CB B:ASP171 4.4 18.5 1.0 CG B:HIS115 4.5 17.4 1.0 CB B:ALA145 4.5 14.4 1.0 CE1 B:HIS116 4.5 20.9 1.0 CB B:ASP94 4.6 16.1 1.0 CB B:SER144 4.8 16.6 1.0 O3A B:CTP503 4.8 21.4 1.0 CE1 B:HIS427 4.8 27.5 1.0 NE2 B:HIS116 4.9 22.1 1.0 OD2 B:ASP45 5.0 17.0 1.0

Manganese binding site 4 out of 4 in the Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus in Complex with Dctp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn502 b:22.9 occ:1.00 OD2 B:ASP94 2.0 13.5 1.0 O1A B:CTP503 2.1 18.7 1.0 OD2 B:ASP45 2.3 17.0 1.0 ND1 B:HIS43 2.4 20.4 1.0 OD1 B:ASP45 2.4 16.1 1.0 CG B:ASP45 2.7 18.0 1.0 CG B:ASP94 3.0 15.3 1.0 PA B:CTP503 3.1 20.0 1.0 CE1 B:HIS43 3.2 18.1 1.0 OD1 B:ASP94 3.4 14.8 1.0 MN B:MN501 3.4 17.7 1.0 CG B:HIS43 3.4 18.4 1.0 O2A B:CTP503 3.5 17.4 1.0 O5' B:CTP503 3.7 20.5 1.0 CB B:HIS43 3.8 18.2 1.0 C5' B:CTP503 4.2 26.3 1.0 CB B:ASP45 4.2 18.4 1.0 CB B:ASP94 4.3 16.1 1.0 CB B:ASP47 4.3 16.0 1.0 N B:GLY48 4.4 14.9 1.0 NE2 B:HIS43 4.4 17.4 1.0 OD1 B:ASP171 4.5 20.7 1.0 CD2 B:HIS43 4.5 18.4 1.0 OD2 B:ASP47 4.5 15.7 1.0 O3A B:CTP503 4.6 21.4 1.0 O3' B:CTP503 4.7 32.8 1.0 C3' B:CTP503 4.8 33.4 1.0 OD2 B:ASP171 4.8 20.0 1.0 CA B:GLY48 4.8 15.1 1.0 O B:HOH648 4.8 13.3 1.0 O B:ASP94 4.9 17.9 1.0 CG B:ASP47 5.0 16.6 1.0

M.De March, S.Onesti. Crystal Structure of RECJCDC45 From Methanothermobacter Thermoautotroficus To Be Published.