Manganese in PDB 7bhi: Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus

The structure of Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus, PDB code: 7bhi was solved by M.De March, S.Onesti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	88.79 / 2.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	40.471, 55.01, 89.99, 81.38, 86.36, 89.95
R / Rfree (%)	23.1 / 27.1

The binding sites of Manganese atom in the Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus (pdb code 7bhi). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus, PDB code: 7bhi:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:42.1 occ:1.00 OD2 A:ASP94 2.1 27.8 1.0 OD1 A:ASP45 2.5 18.4 1.0 OD2 A:ASP45 2.5 20.5 1.0 ND1 A:HIS43 2.7 24.2 1.0 CG A:ASP45 2.8 19.8 1.0 CG A:ASP94 3.2 25.5 1.0 MN A:MN502 3.2 17.9 1.0 CE1 A:HIS43 3.4 25.3 1.0 OD1 A:ASP94 3.6 24.9 1.0 CG A:HIS43 3.8 23.8 1.0 OD2 A:ASP171 4.1 34.7 1.0 CB A:ASP47 4.2 18.4 1.0 CB A:HIS43 4.2 22.1 1.0 OD1 A:ASP171 4.2 34.9 1.0 CB A:ASP45 4.4 19.3 1.0 N A:GLY48 4.4 16.8 1.0 CB A:ASP94 4.4 25.3 1.0 OD2 A:ASP47 4.4 20.1 1.0 NE2 A:HIS43 4.6 25.1 1.0 CG A:ASP171 4.6 32.9 1.0 CG A:ASP47 4.8 19.1 1.0 CD2 A:HIS43 4.8 24.8 1.0 CA A:GLY48 5.0 16.2 1.0

Manganese binding site 2 out of 4 in the Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn502 b:17.9 occ:1.00 OD2 A:ASP47 2.1 20.1 1.0 OD2 A:ASP171 2.2 34.7 1.0 OD1 A:ASP94 2.2 24.9 1.0 NE2 A:HIS115 2.3 18.9 1.0 CG A:ASP94 2.9 25.5 1.0 OD2 A:ASP94 3.0 27.8 1.0 CG A:ASP47 3.1 19.1 1.0 CE1 A:HIS115 3.2 18.6 1.0 MN A:MN501 3.2 42.1 1.0 CG A:ASP171 3.4 32.9 1.0 CD2 A:HIS115 3.4 19.1 1.0 CB A:ASP47 3.5 18.4 1.0 OD1 A:ASP171 3.9 34.9 1.0 NE2 A:HIS116 4.2 46.6 1.0 OD1 A:ASP47 4.3 20.1 1.0 CB A:ASP94 4.3 25.3 1.0 ND1 A:HIS115 4.3 18.9 1.0 CG A:HIS115 4.5 19.7 1.0 CE1 A:HIS116 4.5 46.8 1.0 N A:ALA145 4.5 19.2 1.0 CB A:ASP171 4.5 30.9 1.0 CB A:ALA145 4.6 19.2 1.0 CB A:SER144 4.9 22.0 1.0 CA A:ASP47 4.9 17.9 1.0

Manganese binding site 3 out of 4 in the Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:41.1 occ:1.00 OD2 B:ASP94 2.0 23.2 1.0 ND1 B:HIS43 2.6 20.1 1.0 OD1 B:ASP45 2.7 19.3 1.0 OD2 B:ASP45 2.8 21.5 1.0 CG B:ASP94 3.0 23.6 1.0 CG B:ASP45 3.1 20.6 1.0 MN B:MN502 3.1 19.6 1.0 CE1 B:HIS43 3.3 20.3 1.0 OD1 B:ASP94 3.4 22.5 1.0 CG B:HIS43 3.7 19.8 1.0 CB B:HIS43 4.1 19.3 1.0 OD2 B:ASP171 4.2 32.2 1.0 CB B:ASP94 4.2 23.8 1.0 CB B:ASP47 4.3 17.0 1.0 OD1 B:ASP171 4.4 29.7 1.0 OD2 B:ASP47 4.4 16.7 1.0 N B:GLY48 4.4 16.9 1.0 NE2 B:HIS43 4.5 20.2 1.0 CB B:ASP45 4.6 19.9 1.0 CD2 B:HIS43 4.7 20.0 1.0 CG B:ASP171 4.7 29.3 1.0 O B:ASP94 4.8 23.6 1.0 CG B:ASP47 4.9 17.3 1.0 CE1 B:HIS116 4.9 40.5 1.0

Manganese binding site 4 out of 4 in the Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn502 b:19.6 occ:1.00 OD2 B:ASP47 2.1 16.7 1.0 OD2 B:ASP171 2.1 32.2 1.0 OD1 B:ASP94 2.3 22.5 1.0 NE2 B:HIS115 2.5 23.4 1.0 OD2 B:ASP94 2.9 23.2 1.0 CG B:ASP94 2.9 23.6 1.0 CG B:ASP47 3.0 17.3 1.0 MN B:MN501 3.1 41.1 1.0 CG B:ASP171 3.2 29.3 1.0 CE1 B:HIS115 3.3 23.1 1.0 CB B:ASP47 3.3 17.0 1.0 CD2 B:HIS115 3.6 23.7 1.0 OD1 B:ASP171 3.8 29.7 1.0 OD1 B:ASP47 4.2 19.2 1.0 NE2 B:HIS116 4.4 38.9 1.0 CB B:ASP94 4.4 23.8 1.0 CB B:ASP171 4.4 28.8 1.0 ND1 B:HIS115 4.5 23.6 1.0 N B:ALA145 4.6 19.5 1.0 CB B:ALA145 4.6 18.8 1.0 CE1 B:HIS116 4.6 40.5 1.0 CG B:HIS115 4.6 23.9 1.0 CA B:ASP47 4.8 17.1 1.0 CB B:SER144 4.9 22.3 1.0

M.De March, S.Onesti. Crystal Structure of Recj-CDC45 From Methanothermobacter Thermoautotrophicus To Be Published.