Manganese in PDB 6xl1: Crystal Structure of CA4-Activated CARD1(D294N)

The structure of Crystal Structure of CA4-Activated CARD1(D294N), PDB code: 6xl1 was solved by J.Rostol, W.Xie, D.J.Patel, L.Marraffini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.58 / 1.95
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	111.946, 111.946, 172.18, 90, 90, 90
R / Rfree (%)	17.8 / 20.2

The binding sites of Manganese atom in the Crystal Structure of CA4-Activated CARD1(D294N) (pdb code 6xl1). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of CA4-Activated CARD1(D294N), PDB code: 6xl1:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Crystal Structure of CA4-Activated CARD1(D294N)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of CA4-Activated CARD1(D294N) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn901 b:81.2 occ:1.00 O A:HOH1215 2.3 46.9 1.0 OE1 A:GLU308 2.4 46.5 1.0 OD1 A:ASN294 2.5 37.1 1.0 O A:CYS309 2.5 41.4 1.0 O A:HOH1014 2.6 41.6 1.0 CD A:GLU308 3.3 42.5 1.0 CG A:ASN294 3.4 36.0 1.0 ND2 A:ASN294 3.6 35.2 1.0 NZ A:LYS310 3.6 54.6 1.0 C A:CYS309 3.7 37.8 1.0 OE2 A:GLU308 4.0 37.8 1.0 CE A:LYS310 4.0 41.7 1.0 N A:CYS309 4.1 33.5 1.0 CG A:GLU308 4.2 36.6 1.0 CD A:LYS310 4.3 47.9 1.0 OE2 A:GLU259 4.3 48.4 1.0 CA A:CYS309 4.4 36.9 1.0 CB A:CYS309 4.6 35.1 1.0 N A:LYS310 4.8 37.1 1.0 CB A:ASN294 4.8 30.4 1.0 O A:HOH1178 4.9 36.4 1.0 CG A:LYS310 5.0 46.4 1.0 O A:HOH1222 5.0 45.2 1.0 C A:GLU308 5.0 32.9 1.0

Manganese binding site 2 out of 4 in the Crystal Structure of CA4-Activated CARD1(D294N)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of CA4-Activated CARD1(D294N) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn402 b:66.8 occ:1.00 O B:CYS309 2.2 36.0 1.0 O B:HOH547 2.4 41.0 1.0 O B:HOH525 2.4 43.7 1.0 OD1 B:ASN294 2.5 31.1 1.0 O B:HOH688 2.5 40.7 1.0 OE2 B:GLU308 2.6 40.1 1.0 CG B:ASN294 3.3 35.3 1.0 C B:CYS309 3.4 34.3 1.0 CD B:GLU308 3.5 40.2 1.0 ND2 B:ASN294 3.5 33.5 1.0 N B:CYS309 3.9 29.0 1.0 NZ B:LYS310 4.0 52.9 1.0 CA B:CYS309 4.0 35.4 1.0 OE1 B:GLU308 4.1 34.6 1.0 CE B:LYS310 4.1 42.2 1.0 CB B:CYS309 4.2 34.5 1.0 CD B:LYS310 4.3 45.4 1.0 OE1 B:GLU259 4.3 45.7 1.0 CG B:GLU308 4.4 28.9 1.0 N B:LYS310 4.5 33.3 1.0 O B:HOH616 4.6 42.9 1.0 O B:HOH656 4.6 38.7 1.0 CB B:ASN294 4.7 26.9 1.0 CA B:LYS310 4.8 36.8 1.0 C B:GLU308 4.8 30.7 1.0 CG B:LYS310 4.9 43.4 1.0

Manganese binding site 3 out of 4 in the Crystal Structure of CA4-Activated CARD1(D294N)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of CA4-Activated CARD1(D294N) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn403 b:30.1 occ:1.00 OD2 B:ASP83 2.0 29.1 1.0 OD1 B:ASN79 2.2 29.7 1.0 O B:HOH571 2.3 30.4 1.0 CG B:ASN79 3.1 30.6 1.0 CG B:ASP83 3.1 30.4 1.0 ND2 B:ASN79 3.2 37.5 1.0 OD1 B:ASP83 3.4 31.9 1.0 O B:HOH704 3.8 34.3 1.0 O B:HOH578 3.9 42.0 1.0 O B:HOH632 4.1 40.8 1.0 CB B:ASP83 4.4 26.8 1.0 O B:ASN79 4.5 28.0 1.0 CB B:ASN79 4.5 29.9 1.0 O B:HOH524 4.7 34.6 1.0 C B:ASN79 4.9 29.8 1.0

Manganese binding site 4 out of 4 in the Crystal Structure of CA4-Activated CARD1(D294N)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of CA4-Activated CARD1(D294N) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn404 b:43.4 occ:1.00 O B:HOH717 2.1 40.7 1.0 NE2 B:HIS271 2.2 37.5 1.0 O B:HOH554 2.3 38.1 1.0 O B:HOH722 2.4 34.8 1.0 CD2 B:HIS271 3.2 37.7 1.0 CE1 B:HIS271 3.2 40.2 1.0 OD1 B:ASN272 4.0 29.3 1.0 ND1 B:HIS271 4.3 37.7 1.0 O B:HOH662 4.3 47.3 1.0 CG B:HIS271 4.3 37.2 1.0 CG B:ASN272 4.5 33.0 1.0 CB B:ASN272 4.6 31.2 1.0

J.Rostol, W.Xie, D.J.Patel, L.Marraffini. Crystal Structure of CA4-Activated CARD1 To Be Published.