Manganese in PDB 6wz7: Mn-Bound Structure of A TRICYT3 Variant

Protein crystallography data

The structure of Mn-Bound Structure of A TRICYT3 Variant, PDB code: 6wz7 was solved by F.A.Tezcan, A.Kakkis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.40 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 140.978, 81.847, 53.385, 90.00, 90.04, 90.00
R / Rfree (%) 18 / 21.9

Other elements in 6wz7:

The structure of Mn-Bound Structure of A TRICYT3 Variant also contains other interesting chemical elements:

Iron (Fe) 3 atoms
Calcium (Ca) 9 atoms
Chlorine (Cl) 5 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Mn-Bound Structure of A TRICYT3 Variant (pdb code 6wz7). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Mn-Bound Structure of A TRICYT3 Variant, PDB code: 6wz7:

Manganese binding site 1 out of 1 in 6wz7

Go back to Manganese Binding Sites List in 6wz7
Manganese binding site 1 out of 1 in the Mn-Bound Structure of A TRICYT3 Variant


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Mn-Bound Structure of A TRICYT3 Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn202

b:31.4
occ:1.00
NE2 A:HIS73 2.2 28.8 1.0
NE2 B:HIS73 2.2 28.8 1.0
NE2 C:HIS73 2.2 28.4 1.0
NE2 C:HIS77 2.3 30.9 1.0
NE2 B:HIS77 2.3 32.0 1.0
NE2 A:HIS77 2.3 31.2 1.0
CE1 C:HIS77 3.0 30.0 1.0
CE1 B:HIS77 3.1 28.9 1.0
CE1 A:HIS77 3.1 28.8 1.0
CE1 B:HIS73 3.2 24.2 1.0
CE1 C:HIS73 3.2 25.7 1.0
CE1 A:HIS73 3.2 23.8 1.0
CD2 A:HIS73 3.2 21.5 1.0
CD2 B:HIS73 3.2 22.6 1.0
CD2 C:HIS73 3.3 22.1 1.0
CD2 C:HIS77 3.4 30.8 1.0
CD2 B:HIS77 3.4 33.1 1.0
CD2 A:HIS77 3.4 31.0 1.0
ND1 C:HIS77 4.2 29.1 1.0
ND1 B:HIS77 4.3 35.1 1.0
ND1 A:HIS77 4.3 29.5 1.0
ND1 B:HIS73 4.3 26.6 1.0
ND1 A:HIS73 4.3 24.2 1.0
ND1 C:HIS73 4.3 28.5 1.0
CG A:HIS73 4.3 23.8 1.0
CG B:HIS73 4.4 23.2 1.0
CG C:HIS73 4.4 22.4 1.0
CG C:HIS77 4.4 40.7 1.0
CG B:HIS77 4.5 41.5 1.0
CG A:HIS77 4.5 38.4 1.0
O B:HOH320 4.8 35.4 1.0
O A:HOH317 4.8 35.8 1.0
O C:HOH314 4.9 28.8 1.0

Reference:

F.A.Tezcan, A.Kakkis, D.Gagnon, J.Esselborn, R.D.Britt. Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites. Angew.Chem.Int.Ed.Engl. 2020.
ISSN: ESSN 1521-3773
PubMed: 32830423
DOI: 10.1002/ANIE.202009226
Page generated: Tue Dec 15 05:07:17 2020

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