Manganese in PDB 6wfv: The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human

Enzymatic activity of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human

All present enzymatic activity of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human:
1.14.11.4; 2.4.1.50; 2.4.1.66;

Protein crystallography data

The structure of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human, PDB code: 6wfv was solved by H.-F.Guo, C.-L.Tsai, M.D.Miller, G.N.Philips Jr., J.A.Tainer, J.M.Kurie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	41.18 / 1.70
*Space group*	P 3₂ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	71.066, 71.066, 110.813, 90, 90, 120
*R / R_free (%)*	15.2 / 17.2

Other elements in 6wfv:

The structure of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human (pdb code 6wfv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human, PDB code: 6wfv:

Manganese binding site 1 out of 1 in 6wfv

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Manganese Binding Sites List in 6wfv

Manganese binding site 1 out of 1 in the The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn301 b:28.5 occ:0.17	MG	A:MG302	0.0	30.4	0.8
	OD2	A:ASP112	2.1	24.3	1.0
	NE2	A:HIS253	2.3	24.5	1.0
	O1A	A:UDP304	2.3	33.5	1.0
	O1B	A:UDP304	2.3	31.7	1.0
	OD2	A:ASP115	2.4	26.5	1.0
	OD1	A:ASP115	2.4	23.9	1.0
	CG	A:ASP115	2.8	26.7	1.0
	CG	A:ASP112	3.1	25.9	1.0
	CE1	A:HIS253	3.2	32.6	1.0
	CD2	A:HIS253	3.3	24.9	1.0
	HB3	A:ASP112	3.3	23.2	1.0
	HE1	A:HIS253	3.4	39.1	1.0
	O	A:HOH406	3.4	48.3	1.0
	HD2	A:HIS253	3.4	29.9	1.0
	HB2	A:ASP112	3.4	23.2	1.0
	PA	A:UDP304	3.4	41.5	1.0
	H5'2	A:UDP304	3.5	22.3	1.0
	CB	A:ASP112	3.5	19.3	1.0
	O3A	A:UDP304	3.6	47.7	1.0
	PB	A:UDP304	3.6	36.9	1.0
	HO3'	A:UDP304	3.9	22.6	1.0
	O3'	A:UDP304	4.0	18.8	1.0
	HB3	A:ASN255	4.1	38.4	1.0
	O	A:HOH526	4.1	29.4	1.0
	OD1	A:ASP112	4.3	26.1	1.0
	C5'	A:UDP304	4.3	18.6	1.0
	CB	A:ASP115	4.3	26.2	1.0
	O5'	A:UDP304	4.3	25.1	1.0
	HA	A:ASN255	4.3	36.7	1.0
	ND1	A:HIS253	4.3	25.2	1.0
	CG	A:HIS253	4.4	22.6	1.0
	HG23	A:VAL116	4.4	25.9	1.0
	O2B	A:UDP304	4.5	38.6	1.0
	O2A	A:UDP304	4.6	53.6	1.0
	HA3	A:GLY167	4.6	24.7	1.0
	O3B	A:UDP304	4.6	34.7	1.0
	HB3	A:ASP115	4.6	31.4	1.0
	H	A:ASP115	4.7	28.0	1.0
	HB2	A:ASP115	4.7	31.4	1.0
	HB2	A:ASN255	4.7	38.4	1.0
	H4'	A:UDP304	4.7	19.3	1.0
	CB	A:ASN255	4.8	32.0	1.0
	O	A:HOH567	4.8	34.8	1.0
	C4'	A:UDP304	4.8	16.1	1.0
	C3'	A:UDP304	4.9	20.9	1.0
	O	A:HOH499	4.9	39.7	1.0
	HA2	A:GLY167	5.0	24.7	1.0
	H3'	A:UDP304	5.0	25.0	1.0

Reference:

H.-F.Guo, C.-L.Tsai, M.D.Miller, G.N.Philips Jr., J.A.Tainer, J.M.Kurie. The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human To Be Published.

Page generated: Sun Oct 6 07:44:29 2024

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