Manganese in PDB 6we0: Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site

The structure of Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site, PDB code: 6we0 was solved by K.Tompkins, L.A.Litzau, K.Shi, A.Nelson, R.L.Evans Iii, W.R.Gordon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.34 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.572, 50.010, 73.441, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 21.6

The binding sites of Manganese atom in the Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site (pdb code 6we0). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site, PDB code: 6we0:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:20.7 occ:1.00 OE1 A:GLU110 1.9 31.0 1.0 OP1 C:DA306 2.0 26.1 1.0 NE2 A:HIS61 2.0 21.2 1.0 NE2 A:HIS59 2.1 25.2 1.0 CD A:GLU110 2.6 37.4 1.0 OE2 A:GLU110 2.7 36.8 1.0 CD2 A:HIS59 3.0 22.4 1.0 CD2 A:HIS61 3.0 22.5 1.0 CE1 A:HIS61 3.0 23.2 1.0 P C:DA306 3.1 26.1 1.0 CE1 A:HIS59 3.2 29.6 1.0 O3' C:DT305 3.3 28.0 1.0 O5' C:DA306 3.6 25.6 1.0 CG A:GLU51 3.8 28.6 0.6 ND1 A:HIS61 4.1 21.0 1.0 CG A:GLU110 4.1 38.5 1.0 CG A:HIS61 4.1 17.8 1.0 CG A:HIS59 4.2 22.4 1.0 CE1 A:PHE106 4.2 28.5 1.0 CD A:GLU51 4.3 30.8 0.4 ND1 A:HIS59 4.3 25.6 1.0 OE1 A:GLU51 4.3 30.4 0.6 CB A:GLU51 4.4 30.6 1.0 OP2 C:DA306 4.4 26.0 1.0 CZ A:PHE106 4.6 29.1 1.0 C3' C:DT305 4.7 25.7 1.0 CB A:GLU110 4.7 32.3 1.0 C5' C:DA306 4.9 22.1 1.0

Manganese binding site 2 out of 4 in the Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn401 b:31.1 occ:1.00 N7 C:DA301 2.1 22.6 1.0 O C:HOH503 2.1 34.8 1.0 O C:HOH509 2.4 38.0 1.0 O C:HOH516 2.4 44.5 1.0 C8 C:DA301 3.0 26.5 1.0 C5 C:DA301 3.2 23.9 1.0 N6 C:DA301 3.6 22.3 1.0 C6 C:DA301 3.9 22.9 1.0 N9 C:DA301 4.3 23.7 1.0 C4 C:DA301 4.4 23.2 1.0 OP2 C:DA300 4.4 32.3 1.0 O4 C:DT302 4.5 24.8 1.0 C7 C:DT302 4.6 22.9 1.0 C8 C:DA300 4.6 24.7 1.0 N7 C:DA300 4.9 28.2 1.0

Manganese binding site 3 out of 4 in the Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn402 b:36.0 occ:0.60 N7 C:DA303 2.2 26.6 1.0 O C:HOH512 2.2 31.6 1.0 C8 C:DA303 3.1 25.6 1.0 C5 C:DA303 3.3 24.4 1.0 N6 C:DA303 3.6 32.0 1.0 C6 C:DA303 3.8 29.2 1.0 C7 C:DT302 4.1 22.9 1.0 OP2 C:DA303 4.1 26.5 1.0 N9 C:DA303 4.3 24.5 1.0 C4 C:DA303 4.4 25.2 1.0 O C:HOH508 4.7 42.2 1.0 C5 C:DT302 4.8 21.2 1.0 C6 C:DT302 5.0 26.0 1.0

Manganese binding site 4 out of 4 in the Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Wheat Dwarf Virus Rep Domain Complexed with A Single-Stranded Dna 10- Mer Comprising the Cleavage Site within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn403 b:37.6 occ:0.69 N7 C:DA306 2.0 26.1 1.0 O C:HOH515 2.1 47.2 1.0 C8 C:DA306 2.8 27.2 1.0 C5 C:DA306 3.2 23.1 1.0 N6 C:DA306 3.7 25.0 1.0 C6 C:DA306 3.9 21.4 1.0 N9 C:DA306 4.1 21.6 1.0 C4 C:DA306 4.3 21.4 1.0 O C:HOH504 4.3 31.2 1.0 C7 C:DT305 4.6 30.7 1.0 ND2 A:ASN93 4.8 21.6 1.0 O4 C:DT305 4.9 26.6 1.0 NE2 A:GLN95 5.0 22.4 1.0

K.Tompkins, K.Tompkins, L.A.Litzau, K.Shi, A.Nelson, R.L.Evans Iii, W.R.Gordon. N/A N/A.