Manganese in PDB 6vsu: Arginase From Arabidopsis Thaliana in Complex with Ornithine
Enzymatic activity of Arginase From Arabidopsis Thaliana in Complex with Ornithine
All present enzymatic activity of Arginase From Arabidopsis Thaliana in Complex with Ornithine:
3.5.3.1;
3.5.3.11;
Protein crystallography data
The structure of Arginase From Arabidopsis Thaliana in Complex with Ornithine, PDB code: 6vsu
was solved by
B.Sekula,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.97 /
2.25
|
Space group
|
I 41 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
267.322,
267.322,
262.894,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.9 /
19.7
|
Other elements in 6vsu:
The structure of Arginase From Arabidopsis Thaliana in Complex with Ornithine also contains other interesting chemical elements:
Manganese Binding Sites:
Manganese binding site 1 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 1 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:32.2
occ:1.00
|
O
|
A:HOH517
|
2.0
|
33.6
|
1.0
|
OD1
|
A:ASP185
|
2.0
|
35.6
|
1.0
|
OD2
|
A:ASP272
|
2.1
|
34.9
|
1.0
|
OD2
|
A:ASP270
|
2.1
|
31.8
|
1.0
|
ND1
|
A:HIS187
|
2.3
|
31.1
|
1.0
|
OD1
|
A:ASP272
|
2.5
|
31.0
|
1.0
|
CG
|
A:ASP272
|
2.6
|
31.8
|
1.0
|
CG
|
A:ASP270
|
3.0
|
32.4
|
1.0
|
O
|
A:HOH582
|
3.0
|
37.4
|
1.0
|
CG
|
A:ASP185
|
3.0
|
36.5
|
1.0
|
CE1
|
A:HIS187
|
3.2
|
30.8
|
1.0
|
MN
|
A:MN402
|
3.2
|
41.5
|
1.0
|
CG
|
A:HIS187
|
3.4
|
32.4
|
1.0
|
OD2
|
A:ASP185
|
3.4
|
38.0
|
1.0
|
OD1
|
A:ASP270
|
3.5
|
30.4
|
1.0
|
CB
|
A:HIS187
|
3.8
|
33.8
|
1.0
|
N
|
A:HIS187
|
3.9
|
33.5
|
1.0
|
CB
|
A:ASP270
|
4.0
|
33.5
|
1.0
|
CB
|
A:ASP272
|
4.1
|
30.0
|
1.0
|
N
|
A:ALA186
|
4.1
|
33.0
|
1.0
|
O
|
A:HOH509
|
4.3
|
34.9
|
1.0
|
NE2
|
A:HIS187
|
4.4
|
30.6
|
1.0
|
CB
|
A:ASP185
|
4.4
|
36.7
|
1.0
|
O
|
A:HOH502
|
4.4
|
42.6
|
1.0
|
NE
|
A:ORN404
|
4.4
|
41.2
|
1.0
|
CA
|
A:HIS187
|
4.5
|
34.3
|
1.0
|
CD2
|
A:HIS187
|
4.5
|
31.8
|
1.0
|
CB
|
A:ALA186
|
4.5
|
31.5
|
1.0
|
CD
|
A:ORN404
|
4.6
|
45.6
|
1.0
|
CA
|
A:ALA186
|
4.7
|
32.5
|
1.0
|
CA
|
A:ASP185
|
4.7
|
35.5
|
1.0
|
C
|
A:ALA186
|
4.7
|
33.1
|
1.0
|
OD2
|
A:ASP189
|
4.8
|
40.9
|
1.0
|
OD1
|
A:ASP189
|
4.8
|
38.9
|
1.0
|
C
|
A:ASP185
|
4.8
|
34.6
|
1.0
|
O
|
A:HIS187
|
4.9
|
36.2
|
1.0
|
|
Manganese binding site 2 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 2 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn402
b:41.5
occ:1.00
|
OD2
|
A:ASP189
|
1.9
|
40.9
|
1.0
|
OD2
|
A:ASP185
|
2.0
|
38.0
|
1.0
|
ND1
|
A:HIS161
|
2.3
|
38.7
|
1.0
|
O
|
A:HOH502
|
2.4
|
42.6
|
1.0
|
O
|
A:HOH517
|
2.4
|
33.6
|
1.0
|
OD2
|
A:ASP270
|
2.4
|
31.8
|
1.0
|
CG
|
A:ASP189
|
2.9
|
39.8
|
1.0
|
CG
|
A:ASP185
|
2.9
|
36.5
|
1.0
|
CE1
|
A:HIS161
|
3.2
|
40.1
|
1.0
|
MN
|
A:MN401
|
3.2
|
32.2
|
1.0
|
OD1
|
A:ASP185
|
3.2
|
35.6
|
1.0
|
CG
|
A:HIS161
|
3.3
|
39.6
|
1.0
|
OD1
|
A:ASP189
|
3.3
|
38.9
|
1.0
|
CG
|
A:ASP270
|
3.5
|
32.4
|
1.0
|
CB
|
A:HIS161
|
3.6
|
39.1
|
1.0
|
O
|
A:HOH582
|
3.8
|
37.4
|
1.0
|
CB
|
A:ASP270
|
3.9
|
33.5
|
1.0
|
NE
|
A:ORN404
|
4.0
|
41.2
|
1.0
|
CB
|
A:ASP189
|
4.2
|
40.9
|
1.0
|
CB
|
A:ASP185
|
4.3
|
36.7
|
1.0
|
NE2
|
A:HIS161
|
4.3
|
41.7
|
1.0
|
CD2
|
A:HIS161
|
4.4
|
41.4
|
1.0
|
O
|
A:HIS201
|
4.5
|
48.3
|
1.0
|
O
|
A:HIS187
|
4.6
|
36.2
|
1.0
|
NE2
|
A:HIS183
|
4.6
|
39.3
|
1.0
|
OD1
|
A:ASP270
|
4.7
|
30.4
|
1.0
|
CG
|
A:GLU313
|
4.7
|
31.8
|
1.0
|
CB
|
A:HIS187
|
4.7
|
33.8
|
1.0
|
ND1
|
A:HIS187
|
4.8
|
31.1
|
1.0
|
OD2
|
A:ASP272
|
5.0
|
34.9
|
1.0
|
|
Manganese binding site 3 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 3 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn401
b:32.0
occ:1.00
|
O
|
B:HOH505
|
1.9
|
23.2
|
1.0
|
OD2
|
B:ASP272
|
1.9
|
31.1
|
1.0
|
OD1
|
B:ASP185
|
2.2
|
31.2
|
1.0
|
OD2
|
B:ASP270
|
2.2
|
26.7
|
1.0
|
ND1
|
B:HIS187
|
2.3
|
33.9
|
1.0
|
CG
|
B:ASP272
|
2.6
|
30.1
|
1.0
|
OD1
|
B:ASP272
|
2.6
|
30.1
|
1.0
|
O
|
B:HOH678
|
3.0
|
38.9
|
1.0
|
CG
|
B:ASP270
|
3.1
|
25.7
|
1.0
|
CG
|
B:ASP185
|
3.2
|
30.0
|
1.0
|
CE1
|
B:HIS187
|
3.2
|
35.0
|
1.0
|
MN
|
B:MN402
|
3.3
|
36.9
|
1.0
|
CG
|
B:HIS187
|
3.3
|
35.0
|
1.0
|
OD2
|
B:ASP185
|
3.5
|
27.8
|
1.0
|
OD1
|
B:ASP270
|
3.6
|
25.0
|
1.0
|
CB
|
B:HIS187
|
3.6
|
34.5
|
1.0
|
N
|
B:HIS187
|
3.9
|
34.2
|
1.0
|
CB
|
B:ASP272
|
4.0
|
29.5
|
1.0
|
CB
|
B:ASP270
|
4.1
|
25.7
|
1.0
|
N
|
B:ALA186
|
4.2
|
33.1
|
1.0
|
O
|
B:HOH663
|
4.3
|
40.1
|
1.0
|
NE2
|
B:HIS187
|
4.4
|
36.6
|
1.0
|
CA
|
B:HIS187
|
4.4
|
35.0
|
1.0
|
O
|
B:HOH630
|
4.4
|
53.4
|
1.0
|
CD2
|
B:HIS187
|
4.4
|
37.3
|
1.0
|
CB
|
B:ASP185
|
4.5
|
30.0
|
1.0
|
CB
|
B:ALA186
|
4.6
|
33.9
|
1.0
|
C
|
B:ALA186
|
4.7
|
34.4
|
1.0
|
CA
|
B:ALA186
|
4.7
|
34.1
|
1.0
|
CA
|
B:ASP185
|
4.7
|
30.2
|
1.0
|
C
|
B:ASP185
|
4.9
|
32.2
|
1.0
|
OD1
|
B:ASP189
|
4.9
|
38.0
|
1.0
|
O
|
B:HIS187
|
4.9
|
33.5
|
1.0
|
OD2
|
B:ASP189
|
4.9
|
38.0
|
1.0
|
|
Manganese binding site 4 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 4 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn402
b:36.9
occ:1.00
|
O
|
B:HOH505
|
1.9
|
23.2
|
1.0
|
OD2
|
B:ASP189
|
2.0
|
38.0
|
1.0
|
OD2
|
B:ASP185
|
2.2
|
27.8
|
1.0
|
ND1
|
B:HIS161
|
2.3
|
24.8
|
1.0
|
OD2
|
B:ASP270
|
2.4
|
26.7
|
1.0
|
O
|
B:HOH630
|
2.7
|
53.4
|
1.0
|
CG
|
B:ASP189
|
3.0
|
36.8
|
1.0
|
CG
|
B:ASP185
|
3.1
|
30.0
|
1.0
|
CE1
|
B:HIS161
|
3.2
|
25.3
|
1.0
|
CG
|
B:HIS161
|
3.3
|
24.9
|
1.0
|
OD1
|
B:ASP189
|
3.3
|
38.0
|
1.0
|
MN
|
B:MN401
|
3.3
|
32.0
|
1.0
|
OD1
|
B:ASP185
|
3.3
|
31.2
|
1.0
|
CG
|
B:ASP270
|
3.6
|
25.7
|
1.0
|
CB
|
B:HIS161
|
3.6
|
25.8
|
1.0
|
O
|
B:HOH678
|
3.8
|
38.9
|
1.0
|
CB
|
B:ASP270
|
4.0
|
25.7
|
1.0
|
CB
|
B:ASP189
|
4.3
|
36.7
|
1.0
|
NE2
|
B:HIS161
|
4.4
|
24.3
|
1.0
|
CD2
|
B:HIS161
|
4.4
|
24.3
|
1.0
|
O
|
B:HIS201
|
4.4
|
32.2
|
1.0
|
CB
|
B:ASP185
|
4.5
|
30.0
|
1.0
|
NE2
|
B:HIS183
|
4.5
|
31.0
|
1.0
|
O
|
B:HIS187
|
4.6
|
33.5
|
1.0
|
CB
|
B:HIS187
|
4.6
|
34.5
|
1.0
|
OD1
|
B:ASP270
|
4.7
|
25.0
|
1.0
|
CG
|
B:GLU313
|
4.7
|
25.7
|
1.0
|
ND1
|
B:HIS187
|
4.9
|
33.9
|
1.0
|
|
Manganese binding site 5 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 5 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn401
b:45.5
occ:1.00
|
O
|
C:HOH534
|
2.0
|
46.1
|
1.0
|
OD1
|
C:ASP185
|
2.1
|
51.5
|
1.0
|
ND1
|
C:HIS187
|
2.3
|
50.9
|
1.0
|
OD2
|
C:ASP270
|
2.3
|
45.2
|
1.0
|
OD2
|
C:ASP272
|
2.4
|
51.1
|
1.0
|
CG
|
C:ASP185
|
2.8
|
51.2
|
1.0
|
OD1
|
C:ASP272
|
2.8
|
47.0
|
1.0
|
CG
|
C:ASP272
|
2.9
|
47.5
|
1.0
|
OD2
|
C:ASP185
|
3.0
|
51.1
|
1.0
|
CE1
|
C:HIS187
|
3.1
|
51.3
|
1.0
|
CG
|
C:ASP270
|
3.4
|
45.8
|
1.0
|
CG
|
C:HIS187
|
3.4
|
52.3
|
1.0
|
MN
|
C:MN402
|
3.5
|
48.6
|
1.0
|
N
|
C:HIS187
|
3.8
|
52.4
|
1.0
|
CB
|
C:HIS187
|
3.8
|
52.6
|
1.0
|
N
|
C:ALA186
|
4.1
|
51.4
|
1.0
|
NE
|
C:ORN405
|
4.1
|
56.7
|
1.0
|
OD1
|
C:ASP270
|
4.1
|
45.3
|
1.0
|
CB
|
C:ASP270
|
4.2
|
46.8
|
1.0
|
CB
|
C:ASP185
|
4.2
|
51.5
|
1.0
|
NE2
|
C:HIS187
|
4.2
|
52.7
|
1.0
|
O
|
C:HOH569
|
4.4
|
49.0
|
1.0
|
CA
|
C:HIS187
|
4.4
|
53.2
|
1.0
|
CD2
|
C:HIS187
|
4.4
|
53.3
|
1.0
|
CB
|
C:ASP272
|
4.4
|
45.5
|
1.0
|
CB
|
C:ALA186
|
4.5
|
52.4
|
1.0
|
O
|
C:HOH576
|
4.6
|
42.7
|
1.0
|
CD
|
C:ORN405
|
4.6
|
57.5
|
1.0
|
CA
|
C:ALA186
|
4.6
|
52.5
|
1.0
|
C
|
C:ALA186
|
4.7
|
53.0
|
1.0
|
CA
|
C:ASP185
|
4.8
|
51.6
|
1.0
|
C
|
C:ASP185
|
4.8
|
52.0
|
1.0
|
OD2
|
C:ASP189
|
4.8
|
55.3
|
1.0
|
O
|
C:HIS187
|
4.8
|
52.5
|
1.0
|
ND1
|
C:HIS161
|
4.9
|
44.0
|
1.0
|
C
|
C:HIS187
|
5.0
|
53.6
|
1.0
|
|
Manganese binding site 6 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 6 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn402
b:48.6
occ:1.00
|
ND1
|
C:HIS161
|
1.8
|
44.0
|
1.0
|
O
|
C:HOH534
|
2.0
|
46.1
|
1.0
|
OD2
|
C:ASP189
|
2.0
|
55.3
|
1.0
|
OD2
|
C:ASP185
|
2.1
|
51.1
|
1.0
|
O
|
C:HOH569
|
2.4
|
49.0
|
1.0
|
CE1
|
C:HIS161
|
2.6
|
44.1
|
1.0
|
CG
|
C:HIS161
|
2.8
|
45.3
|
1.0
|
CG
|
C:ASP189
|
3.1
|
55.6
|
1.0
|
OD2
|
C:ASP270
|
3.1
|
45.2
|
1.0
|
CG
|
C:ASP185
|
3.2
|
51.2
|
1.0
|
CB
|
C:HIS161
|
3.5
|
45.9
|
1.0
|
MN
|
C:MN401
|
3.5
|
45.5
|
1.0
|
OD1
|
C:ASP189
|
3.5
|
56.1
|
1.0
|
NE2
|
C:HIS161
|
3.7
|
44.9
|
1.0
|
CD2
|
C:HIS161
|
3.8
|
45.3
|
1.0
|
OD1
|
C:ASP185
|
3.8
|
51.5
|
1.0
|
CG
|
C:ASP270
|
3.9
|
45.8
|
1.0
|
CB
|
C:ASP270
|
4.0
|
46.8
|
1.0
|
NE
|
C:ORN405
|
4.1
|
56.7
|
1.0
|
NE2
|
C:HIS183
|
4.3
|
47.2
|
1.0
|
CB
|
C:ASP189
|
4.3
|
56.2
|
1.0
|
CB
|
C:ASP185
|
4.3
|
51.5
|
1.0
|
O
|
C:HIS201
|
4.6
|
53.3
|
1.0
|
CG
|
C:GLU313
|
4.8
|
39.7
|
1.0
|
CA
|
C:HIS161
|
4.9
|
46.4
|
1.0
|
CE1
|
C:HIS183
|
5.0
|
48.8
|
1.0
|
O
|
C:HIS187
|
5.0
|
52.5
|
1.0
|
|
Manganese binding site 7 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 7 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn401
b:26.7
occ:1.00
|
OD2
|
D:ASP270
|
1.9
|
22.2
|
1.0
|
ND1
|
D:HIS187
|
2.1
|
22.7
|
1.0
|
OD2
|
D:ASP272
|
2.2
|
27.9
|
1.0
|
O
|
D:HOH525
|
2.2
|
22.4
|
1.0
|
OD1
|
D:ASP185
|
2.3
|
23.7
|
1.0
|
OD1
|
D:ASP272
|
2.7
|
25.0
|
1.0
|
O
|
D:HOH660
|
2.7
|
39.0
|
1.0
|
CG
|
D:ASP272
|
2.8
|
25.2
|
1.0
|
CE1
|
D:HIS187
|
2.9
|
23.9
|
1.0
|
CG
|
D:ASP270
|
3.0
|
22.5
|
1.0
|
CG
|
D:ASP185
|
3.2
|
23.4
|
1.0
|
CG
|
D:HIS187
|
3.3
|
24.4
|
1.0
|
MN
|
D:MN402
|
3.3
|
33.4
|
1.0
|
OD1
|
D:ASP270
|
3.6
|
22.2
|
1.0
|
OD2
|
D:ASP185
|
3.7
|
25.1
|
1.0
|
CB
|
D:HIS187
|
3.8
|
23.9
|
1.0
|
N
|
D:HIS187
|
3.9
|
22.2
|
1.0
|
CB
|
D:ASP270
|
4.0
|
22.2
|
1.0
|
NE2
|
D:HIS187
|
4.1
|
23.8
|
1.0
|
N
|
D:ALA186
|
4.2
|
21.0
|
1.0
|
O
|
D:HOH695
|
4.2
|
40.9
|
1.0
|
CB
|
D:ASP272
|
4.3
|
25.0
|
1.0
|
CD2
|
D:HIS187
|
4.3
|
24.5
|
1.0
|
CA
|
D:HIS187
|
4.4
|
23.8
|
1.0
|
O
|
D:HOH646
|
4.5
|
35.7
|
1.0
|
CB
|
D:ASP185
|
4.5
|
22.3
|
1.0
|
CB
|
D:ALA186
|
4.6
|
21.2
|
1.0
|
C
|
D:ALA186
|
4.7
|
22.0
|
1.0
|
CA
|
D:ALA186
|
4.7
|
21.3
|
1.0
|
OD2
|
D:ASP189
|
4.7
|
30.2
|
1.0
|
CA
|
D:ASP185
|
4.8
|
22.0
|
1.0
|
O
|
D:HIS187
|
4.9
|
22.8
|
1.0
|
C
|
D:ASP185
|
4.9
|
21.2
|
1.0
|
ND1
|
D:HIS161
|
4.9
|
21.2
|
1.0
|
OD1
|
D:ASP189
|
5.0
|
30.9
|
1.0
|
|
Manganese binding site 8 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 8 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn402
b:33.4
occ:1.00
|
O
|
D:HOH525
|
1.8
|
22.4
|
1.0
|
OD2
|
D:ASP189
|
1.9
|
30.2
|
1.0
|
ND1
|
D:HIS161
|
2.0
|
21.2
|
1.0
|
OD2
|
D:ASP185
|
2.3
|
25.1
|
1.0
|
OD2
|
D:ASP270
|
2.6
|
22.2
|
1.0
|
CE1
|
D:HIS161
|
2.9
|
22.1
|
1.0
|
O
|
D:HOH695
|
3.0
|
40.9
|
1.0
|
CG
|
D:ASP189
|
3.0
|
29.6
|
1.0
|
CG
|
D:HIS161
|
3.1
|
22.4
|
1.0
|
CG
|
D:ASP185
|
3.1
|
23.4
|
1.0
|
MN
|
D:MN401
|
3.3
|
26.7
|
1.0
|
OD1
|
D:ASP185
|
3.3
|
23.7
|
1.0
|
OD1
|
D:ASP189
|
3.4
|
30.9
|
1.0
|
CB
|
D:HIS161
|
3.5
|
23.6
|
1.0
|
CG
|
D:ASP270
|
3.6
|
22.5
|
1.0
|
O
|
D:HOH660
|
3.7
|
39.0
|
1.0
|
CB
|
D:ASP270
|
3.8
|
22.2
|
1.0
|
NE2
|
D:HIS161
|
4.1
|
21.3
|
1.0
|
CD2
|
D:HIS161
|
4.2
|
22.0
|
1.0
|
CB
|
D:ASP189
|
4.2
|
29.7
|
1.0
|
NE2
|
D:HIS183
|
4.4
|
23.6
|
1.0
|
CB
|
D:ASP185
|
4.5
|
22.3
|
1.0
|
O
|
D:HIS201
|
4.5
|
31.9
|
1.0
|
O
|
D:HIS187
|
4.6
|
22.8
|
1.0
|
OD1
|
D:ASP270
|
4.7
|
22.2
|
1.0
|
CG
|
D:GLU313
|
4.8
|
24.6
|
1.0
|
CB
|
D:HIS187
|
4.8
|
23.9
|
1.0
|
ND1
|
D:HIS187
|
4.8
|
22.7
|
1.0
|
|
Manganese binding site 9 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 9 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn401
b:21.9
occ:1.00
|
OD2
|
E:ASP272
|
2.1
|
25.5
|
1.0
|
O
|
E:HOH507
|
2.2
|
22.7
|
1.0
|
OD1
|
E:ASP185
|
2.2
|
16.9
|
1.0
|
ND1
|
E:HIS187
|
2.3
|
19.4
|
1.0
|
OD2
|
E:ASP270
|
2.3
|
17.9
|
1.0
|
OD1
|
E:ASP272
|
2.6
|
22.7
|
1.0
|
CG
|
E:ASP272
|
2.6
|
22.9
|
1.0
|
O
|
E:HOH540
|
2.9
|
28.1
|
1.0
|
CG
|
E:ASP185
|
3.1
|
16.5
|
1.0
|
CG
|
E:ASP270
|
3.1
|
17.4
|
1.0
|
CE1
|
E:HIS187
|
3.2
|
20.4
|
1.0
|
MN
|
E:MN402
|
3.3
|
25.1
|
1.0
|
CG
|
E:HIS187
|
3.3
|
20.7
|
1.0
|
OD2
|
E:ASP185
|
3.4
|
15.4
|
1.0
|
OD1
|
E:ASP270
|
3.6
|
17.1
|
1.0
|
CB
|
E:HIS187
|
3.7
|
20.1
|
1.0
|
NE
|
E:ORN404
|
3.8
|
51.3
|
1.0
|
N
|
E:HIS187
|
4.0
|
19.0
|
1.0
|
CB
|
E:ASP270
|
4.1
|
17.0
|
1.0
|
N
|
E:ALA186
|
4.1
|
18.0
|
1.0
|
CB
|
E:ASP272
|
4.2
|
22.0
|
1.0
|
O
|
E:HOH521
|
4.2
|
43.2
|
1.0
|
NE2
|
E:HIS187
|
4.3
|
21.4
|
1.0
|
CB
|
E:ASP185
|
4.4
|
16.8
|
1.0
|
CD2
|
E:HIS187
|
4.4
|
21.4
|
1.0
|
CA
|
E:HIS187
|
4.5
|
20.1
|
1.0
|
CB
|
E:ALA186
|
4.5
|
19.1
|
1.0
|
O
|
E:HOH683
|
4.6
|
29.9
|
1.0
|
CD
|
E:ORN404
|
4.6
|
55.3
|
1.0
|
OD2
|
E:ASP189
|
4.7
|
27.5
|
1.0
|
CA
|
E:ALA186
|
4.7
|
18.9
|
1.0
|
C
|
E:ALA186
|
4.7
|
19.1
|
1.0
|
CA
|
E:ASP185
|
4.7
|
17.7
|
1.0
|
C
|
E:ASP185
|
4.8
|
18.3
|
1.0
|
O
|
E:HIS187
|
4.8
|
20.7
|
1.0
|
OD1
|
E:ASP189
|
4.9
|
27.9
|
1.0
|
|
Manganese binding site 10 out
of 48 in 6vsu
Go back to
Manganese Binding Sites List in 6vsu
Manganese binding site 10 out
of 48 in the Arginase From Arabidopsis Thaliana in Complex with Ornithine
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Arginase From Arabidopsis Thaliana in Complex with Ornithine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn402
b:25.1
occ:1.00
|
OD2
|
E:ASP189
|
1.9
|
27.5
|
1.0
|
O
|
E:HOH507
|
2.1
|
22.7
|
1.0
|
OD2
|
E:ASP185
|
2.2
|
15.4
|
1.0
|
ND1
|
E:HIS161
|
2.3
|
17.2
|
1.0
|
O
|
E:HOH521
|
2.4
|
43.2
|
1.0
|
OD2
|
E:ASP270
|
2.6
|
17.9
|
1.0
|
CG
|
E:ASP189
|
3.0
|
25.8
|
1.0
|
CG
|
E:ASP185
|
3.1
|
16.5
|
1.0
|
CG
|
E:HIS161
|
3.2
|
17.0
|
1.0
|
CE1
|
E:HIS161
|
3.2
|
16.5
|
1.0
|
MN
|
E:MN401
|
3.3
|
21.9
|
1.0
|
OD1
|
E:ASP185
|
3.5
|
16.9
|
1.0
|
OD1
|
E:ASP189
|
3.5
|
27.9
|
1.0
|
CB
|
E:HIS161
|
3.5
|
17.9
|
1.0
|
CG
|
E:ASP270
|
3.7
|
17.4
|
1.0
|
O
|
E:HOH540
|
3.7
|
28.1
|
1.0
|
CB
|
E:ASP270
|
3.9
|
17.0
|
1.0
|
NE
|
E:ORN404
|
4.0
|
51.3
|
1.0
|
CB
|
E:ASP189
|
4.3
|
25.2
|
1.0
|
NE2
|
E:HIS161
|
4.3
|
16.5
|
1.0
|
CD2
|
E:HIS161
|
4.4
|
16.4
|
1.0
|
NE2
|
E:HIS183
|
4.5
|
19.4
|
1.0
|
CB
|
E:ASP185
|
4.5
|
16.8
|
1.0
|
O
|
E:HIS201
|
4.6
|
21.5
|
1.0
|
O
|
E:HIS187
|
4.6
|
20.7
|
1.0
|
CB
|
E:HIS187
|
4.7
|
20.1
|
1.0
|
CG
|
E:GLU313
|
4.7
|
17.8
|
1.0
|
OD1
|
E:ASP270
|
4.8
|
17.1
|
1.0
|
ND1
|
E:HIS187
|
4.9
|
19.4
|
1.0
|
|
Reference:
B.Sekula,
B.Sekula.
N/A N/A.
ISSN: ESSN 1664-462X
PubMed: 32754173
DOI: 10.3389/FPLS.2020.00987
Page generated: Sun Oct 6 07:37:16 2024
|