Manganese in PDB 6vss: Arginase From Medicago Truncatula
Enzymatic activity of Arginase From Medicago Truncatula
All present enzymatic activity of Arginase From Medicago Truncatula:
3.5.3.1;
Protein crystallography data
The structure of Arginase From Medicago Truncatula, PDB code: 6vss
was solved by
B.Sekula,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
44.55 /
1.93
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.331,
142.907,
90.045,
90.00,
115.90,
90.00
|
|
R / Rfree (%)
|
18.2 /
21.8
|
Manganese Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Manganese atom in the Arginase From Medicago Truncatula
(pdb code 6vss). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 12 binding sites of Manganese where determined in the
Arginase From Medicago Truncatula, PDB code: 6vss:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 1 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn401
b:27.6
occ:1.00
|
O
|
A:HOH512
|
2.2
|
27.1
|
1.0
|
|
OD2
|
A:ASP266
|
2.2
|
25.9
|
1.0
|
|
OD1
|
A:ASP181
|
2.2
|
24.4
|
1.0
|
|
OD1
|
A:ASP268
|
2.2
|
25.8
|
1.0
|
|
OD2
|
A:ASP268
|
2.3
|
24.6
|
1.0
|
|
ND1
|
A:HIS183
|
2.3
|
26.1
|
1.0
|
|
CG
|
A:ASP268
|
2.6
|
23.6
|
1.0
|
|
O
|
A:HOH584
|
2.7
|
20.1
|
0.5
|
|
CG
|
A:ASP266
|
3.0
|
25.4
|
1.0
|
|
CE1
|
A:HIS183
|
3.1
|
25.5
|
1.0
|
|
CG
|
A:ASP181
|
3.2
|
23.1
|
1.0
|
|
MN
|
A:MN402
|
3.2
|
29.8
|
1.0
|
|
OD1
|
A:ASP266
|
3.4
|
25.6
|
1.0
|
|
CG
|
A:HIS183
|
3.5
|
25.9
|
1.0
|
|
OD2
|
A:ASP181
|
3.6
|
25.5
|
1.0
|
|
O
|
A:HOH584
|
3.8
|
21.9
|
0.5
|
|
CB
|
A:HIS183
|
4.0
|
25.9
|
1.0
|
|
CB
|
A:ASP268
|
4.1
|
23.5
|
1.0
|
|
CB
|
A:ASP266
|
4.2
|
25.9
|
1.0
|
|
N
|
A:HIS183
|
4.2
|
23.9
|
1.0
|
|
N
|
A:ALA182
|
4.3
|
22.1
|
1.0
|
|
NE2
|
A:HIS183
|
4.4
|
24.9
|
1.0
|
|
CB
|
A:ASP181
|
4.5
|
23.3
|
1.0
|
|
CD2
|
A:HIS183
|
4.6
|
25.4
|
1.0
|
|
O
|
A:HOH531
|
4.6
|
22.3
|
1.0
|
|
OD1
|
A:ASP185
|
4.7
|
26.2
|
1.0
|
|
CB
|
A:ALA182
|
4.7
|
22.4
|
1.0
|
|
CA
|
A:HIS183
|
4.7
|
25.9
|
1.0
|
|
CA
|
A:ASP181
|
4.8
|
22.5
|
1.0
|
|
CA
|
A:ALA182
|
4.9
|
23.1
|
1.0
|
|
OD2
|
A:ASP185
|
5.0
|
30.9
|
1.0
|
|
CG
|
A:GLU309
|
5.0
|
22.7
|
1.0
|
|
ND1
|
A:HIS157
|
5.0
|
25.0
|
1.0
|
|
C
|
A:ALA182
|
5.0
|
24.0
|
1.0
|
|
Manganese binding site 2 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 2 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn402
b:29.8
occ:1.00
|
OD2
|
A:ASP181
|
2.1
|
25.5
|
1.0
|
|
O
|
A:HOH512
|
2.1
|
27.1
|
1.0
|
|
ND1
|
A:HIS157
|
2.2
|
25.0
|
1.0
|
|
OD2
|
A:ASP266
|
2.2
|
25.9
|
1.0
|
|
OD2
|
A:ASP185
|
2.2
|
30.9
|
1.0
|
|
O
|
A:HOH584
|
2.9
|
21.9
|
0.5
|
|
CG
|
A:ASP181
|
2.9
|
23.1
|
1.0
|
|
CG
|
A:HIS157
|
3.0
|
23.8
|
1.0
|
|
CG
|
A:ASP185
|
3.0
|
28.8
|
1.0
|
|
CE1
|
A:HIS157
|
3.1
|
24.8
|
1.0
|
|
OD1
|
A:ASP181
|
3.2
|
24.4
|
1.0
|
|
MN
|
A:MN401
|
3.2
|
27.6
|
1.0
|
|
CG
|
A:ASP266
|
3.3
|
25.4
|
1.0
|
|
OD1
|
A:ASP185
|
3.3
|
26.2
|
1.0
|
|
CB
|
A:HIS157
|
3.3
|
23.8
|
1.0
|
|
O
|
A:HOH584
|
3.7
|
20.1
|
0.5
|
|
CB
|
A:ASP266
|
3.8
|
25.9
|
1.0
|
|
CD2
|
A:HIS157
|
4.2
|
24.1
|
1.0
|
|
NE2
|
A:HIS157
|
4.2
|
25.0
|
1.0
|
|
CB
|
A:ASP181
|
4.3
|
23.3
|
1.0
|
|
OD1
|
A:ASP266
|
4.4
|
25.6
|
1.0
|
|
CB
|
A:ASP185
|
4.4
|
26.8
|
1.0
|
|
O
|
A:HIS197
|
4.4
|
35.6
|
1.0
|
|
NE2
|
A:HIS179
|
4.5
|
24.9
|
1.0
|
|
O
|
A:HIS183
|
4.6
|
25.1
|
1.0
|
|
CG
|
A:GLU309
|
4.8
|
22.7
|
1.0
|
|
ND1
|
A:HIS183
|
4.8
|
26.1
|
1.0
|
|
CA
|
A:HIS157
|
4.9
|
23.6
|
1.0
|
|
OD1
|
A:ASP268
|
5.0
|
25.8
|
1.0
|
|
OE2
|
A:GLU309
|
5.0
|
23.9
|
1.0
|
|
Manganese binding site 3 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 3 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn401
b:29.2
occ:1.00
|
OD2
|
B:ASP266
|
2.1
|
30.3
|
1.0
|
|
O
|
B:HOH534
|
2.2
|
29.7
|
1.0
|
|
OD2
|
B:ASP268
|
2.2
|
27.1
|
1.0
|
|
OD1
|
B:ASP181
|
2.2
|
27.8
|
1.0
|
|
OD1
|
B:ASP268
|
2.3
|
26.3
|
1.0
|
|
ND1
|
B:HIS183
|
2.3
|
30.5
|
1.0
|
|
CG
|
B:ASP268
|
2.6
|
23.7
|
1.0
|
|
O
|
B:HOH584
|
3.0
|
13.7
|
0.5
|
|
CG
|
B:ASP266
|
3.0
|
26.1
|
1.0
|
|
MN
|
B:MN402
|
3.1
|
34.7
|
1.0
|
|
CE1
|
B:HIS183
|
3.2
|
29.6
|
1.0
|
|
CG
|
B:ASP181
|
3.3
|
26.4
|
1.0
|
|
OD1
|
B:ASP266
|
3.4
|
25.5
|
1.0
|
|
CG
|
B:HIS183
|
3.5
|
29.4
|
1.0
|
|
OD2
|
B:ASP181
|
3.7
|
29.5
|
1.0
|
|
O
|
B:HOH584
|
3.7
|
24.6
|
0.5
|
|
CB
|
B:HIS183
|
3.9
|
29.6
|
1.0
|
|
CB
|
B:ASP268
|
4.1
|
23.5
|
1.0
|
|
CB
|
B:ASP266
|
4.2
|
25.5
|
1.0
|
|
N
|
B:HIS183
|
4.2
|
26.9
|
1.0
|
|
N
|
B:ALA182
|
4.3
|
25.2
|
1.0
|
|
NE2
|
B:HIS183
|
4.4
|
29.4
|
1.0
|
|
CD2
|
B:HIS183
|
4.5
|
30.3
|
1.0
|
|
O
|
B:HOH554
|
4.6
|
25.4
|
1.0
|
|
CB
|
B:ASP181
|
4.6
|
26.0
|
1.0
|
|
CA
|
B:HIS183
|
4.7
|
28.1
|
1.0
|
|
OD1
|
B:ASP185
|
4.7
|
32.4
|
1.0
|
|
CB
|
B:ALA182
|
4.8
|
24.9
|
1.0
|
|
CG
|
B:GLU309
|
4.9
|
23.3
|
1.0
|
|
CA
|
B:ASP181
|
4.9
|
26.2
|
1.0
|
|
CA
|
B:ALA182
|
4.9
|
25.4
|
1.0
|
|
CA
|
B:ASP268
|
5.0
|
23.1
|
1.0
|
|
OD2
|
B:ASP185
|
5.0
|
37.5
|
1.0
|
|
ND1
|
B:HIS157
|
5.0
|
31.6
|
1.0
|
|
Manganese binding site 4 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 4 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn402
b:34.7
occ:1.00
|
O
|
B:HOH534
|
2.1
|
29.7
|
1.0
|
|
OD2
|
B:ASP181
|
2.1
|
29.5
|
1.0
|
|
OD2
|
B:ASP185
|
2.2
|
37.5
|
1.0
|
|
ND1
|
B:HIS157
|
2.2
|
31.6
|
1.0
|
|
OD2
|
B:ASP266
|
2.2
|
30.3
|
1.0
|
|
O
|
B:HOH584
|
2.5
|
24.6
|
0.5
|
|
CG
|
B:ASP181
|
2.9
|
26.4
|
1.0
|
|
CG
|
B:ASP185
|
3.0
|
34.6
|
1.0
|
|
OD1
|
B:ASP181
|
3.1
|
27.8
|
1.0
|
|
CG
|
B:HIS157
|
3.1
|
29.6
|
1.0
|
|
MN
|
B:MN401
|
3.1
|
29.2
|
1.0
|
|
CE1
|
B:HIS157
|
3.2
|
30.0
|
1.0
|
|
OD1
|
B:ASP185
|
3.3
|
32.4
|
1.0
|
|
CG
|
B:ASP266
|
3.3
|
26.1
|
1.0
|
|
CB
|
B:HIS157
|
3.4
|
29.2
|
1.0
|
|
CB
|
B:ASP266
|
3.7
|
25.5
|
1.0
|
|
O
|
B:HOH584
|
4.1
|
13.7
|
0.5
|
|
CD2
|
B:HIS157
|
4.2
|
29.4
|
1.0
|
|
NE2
|
B:HIS157
|
4.3
|
28.4
|
1.0
|
|
CB
|
B:ASP181
|
4.3
|
26.0
|
1.0
|
|
O
|
B:HIS197
|
4.4
|
39.3
|
1.0
|
|
CB
|
B:ASP185
|
4.4
|
33.2
|
1.0
|
|
OD1
|
B:ASP266
|
4.4
|
25.5
|
1.0
|
|
NE2
|
B:HIS179
|
4.4
|
25.1
|
1.0
|
|
O
|
B:HIS183
|
4.5
|
26.2
|
1.0
|
|
CG
|
B:GLU309
|
4.7
|
23.3
|
1.0
|
|
ND1
|
B:HIS183
|
4.8
|
30.5
|
1.0
|
|
CB
|
B:HIS183
|
4.9
|
29.6
|
1.0
|
|
OD1
|
B:ASP268
|
4.9
|
26.3
|
1.0
|
|
CA
|
B:HIS157
|
4.9
|
27.9
|
1.0
|
|
Manganese binding site 5 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 5 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn401
b:34.0
occ:1.00
|
OD2
|
C:ASP268
|
2.0
|
31.0
|
1.0
|
|
OD2
|
C:ASP266
|
2.2
|
32.4
|
1.0
|
|
O
|
C:HOH512
|
2.2
|
36.3
|
1.0
|
|
OD1
|
C:ASP181
|
2.3
|
29.5
|
1.0
|
|
ND1
|
C:HIS183
|
2.3
|
36.3
|
1.0
|
|
OD1
|
C:ASP268
|
2.4
|
30.6
|
1.0
|
|
CG
|
C:ASP268
|
2.5
|
28.5
|
1.0
|
|
O
|
C:HOH560
|
2.7
|
38.6
|
1.0
|
|
CE1
|
C:HIS183
|
3.0
|
37.4
|
1.0
|
|
CG
|
C:ASP266
|
3.0
|
27.9
|
1.0
|
|
MN
|
C:MN402
|
3.2
|
37.5
|
1.0
|
|
CG
|
C:ASP181
|
3.2
|
28.5
|
1.0
|
|
OD1
|
C:ASP266
|
3.5
|
27.9
|
1.0
|
|
CG
|
C:HIS183
|
3.5
|
36.3
|
1.0
|
|
OD2
|
C:ASP181
|
3.5
|
34.0
|
1.0
|
|
CB
|
C:ASP268
|
4.0
|
27.1
|
1.0
|
|
CB
|
C:HIS183
|
4.0
|
34.3
|
1.0
|
|
NE2
|
C:HIS183
|
4.3
|
36.4
|
1.0
|
|
N
|
C:HIS183
|
4.3
|
30.5
|
1.0
|
|
CB
|
C:ASP266
|
4.3
|
26.2
|
1.0
|
|
N
|
C:ALA182
|
4.3
|
25.6
|
1.0
|
|
CD2
|
C:HIS183
|
4.5
|
36.7
|
1.0
|
|
OD1
|
C:ASP185
|
4.6
|
46.0
|
1.0
|
|
CB
|
C:ASP181
|
4.6
|
26.9
|
1.0
|
|
O
|
C:HOH559
|
4.7
|
30.0
|
1.0
|
|
CB
|
C:ALA182
|
4.8
|
25.9
|
1.0
|
|
CA
|
C:HIS183
|
4.8
|
33.5
|
1.0
|
|
OD2
|
C:ASP185
|
4.9
|
49.2
|
1.0
|
|
CA
|
C:ALA182
|
5.0
|
26.3
|
1.0
|
|
CA
|
C:ASP181
|
5.0
|
25.9
|
1.0
|
|
CA
|
C:ASP268
|
5.0
|
25.1
|
1.0
|
|
CG
|
C:GLU309
|
5.0
|
26.4
|
1.0
|
|
Manganese binding site 6 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 6 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn402
b:37.5
occ:1.00
|
OD2
|
C:ASP181
|
2.0
|
34.0
|
1.0
|
|
O
|
C:HOH512
|
2.1
|
36.3
|
1.0
|
|
OD2
|
C:ASP185
|
2.2
|
49.2
|
1.0
|
|
OD2
|
C:ASP266
|
2.2
|
32.4
|
1.0
|
|
ND1
|
C:HIS157
|
2.2
|
35.0
|
1.0
|
|
CG
|
C:ASP181
|
3.0
|
28.5
|
1.0
|
|
CG
|
C:ASP185
|
3.1
|
47.5
|
1.0
|
|
CG
|
C:HIS157
|
3.1
|
32.5
|
1.0
|
|
MN
|
C:MN401
|
3.2
|
34.0
|
1.0
|
|
CG
|
C:ASP266
|
3.2
|
27.9
|
1.0
|
|
OD1
|
C:ASP181
|
3.3
|
29.5
|
1.0
|
|
CB
|
C:HIS157
|
3.3
|
31.0
|
1.0
|
|
CE1
|
C:HIS157
|
3.3
|
34.1
|
1.0
|
|
OD1
|
C:ASP185
|
3.3
|
46.0
|
1.0
|
|
CB
|
C:ASP266
|
3.6
|
26.2
|
1.0
|
|
O
|
C:HOH560
|
4.1
|
38.6
|
1.0
|
|
CD2
|
C:HIS157
|
4.3
|
32.1
|
1.0
|
|
NE2
|
C:HIS179
|
4.3
|
28.8
|
1.0
|
|
O
|
C:HIS197
|
4.3
|
45.8
|
1.0
|
|
CB
|
C:ASP181
|
4.3
|
26.9
|
1.0
|
|
NE2
|
C:HIS157
|
4.3
|
31.9
|
1.0
|
|
OD1
|
C:ASP266
|
4.4
|
27.9
|
1.0
|
|
CB
|
C:ASP185
|
4.5
|
46.0
|
1.0
|
|
CG
|
C:GLU309
|
4.8
|
26.4
|
1.0
|
|
CA
|
C:HIS157
|
4.8
|
29.1
|
1.0
|
|
OE2
|
C:GLU309
|
4.9
|
29.3
|
1.0
|
|
ND1
|
C:HIS183
|
4.9
|
36.3
|
1.0
|
|
OD1
|
C:ASP268
|
4.9
|
30.6
|
1.0
|
|
O
|
C:HIS183
|
5.0
|
35.2
|
1.0
|
|
OD2
|
C:ASP268
|
5.0
|
31.0
|
1.0
|
|
Manganese binding site 7 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 7 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn401
b:29.4
occ:1.00
|
O
|
D:HOH505
|
2.2
|
27.9
|
1.0
|
|
OD2
|
D:ASP266
|
2.2
|
29.9
|
1.0
|
|
OD2
|
D:ASP268
|
2.2
|
27.3
|
1.0
|
|
OD1
|
D:ASP181
|
2.3
|
28.5
|
1.0
|
|
ND1
|
D:HIS183
|
2.3
|
32.5
|
1.0
|
|
OD1
|
D:ASP268
|
2.3
|
26.5
|
1.0
|
|
CG
|
D:ASP268
|
2.6
|
24.9
|
1.0
|
|
O
|
D:HOH569
|
2.7
|
39.0
|
1.0
|
|
CG
|
D:ASP266
|
3.1
|
27.1
|
1.0
|
|
MN
|
D:MN402
|
3.2
|
36.6
|
1.0
|
|
CE1
|
D:HIS183
|
3.2
|
31.9
|
1.0
|
|
CG
|
D:ASP181
|
3.2
|
28.1
|
1.0
|
|
CG
|
D:HIS183
|
3.4
|
30.8
|
1.0
|
|
OD1
|
D:ASP266
|
3.5
|
26.2
|
1.0
|
|
OD2
|
D:ASP181
|
3.6
|
32.7
|
1.0
|
|
CB
|
D:HIS183
|
3.9
|
30.1
|
1.0
|
|
CB
|
D:ASP268
|
4.1
|
25.0
|
1.0
|
|
N
|
D:HIS183
|
4.2
|
25.9
|
1.0
|
|
CB
|
D:ASP266
|
4.2
|
26.4
|
1.0
|
|
N
|
D:ALA182
|
4.3
|
26.3
|
1.0
|
|
NE2
|
D:HIS183
|
4.4
|
30.9
|
1.0
|
|
CD2
|
D:HIS183
|
4.5
|
32.2
|
1.0
|
|
CB
|
D:ASP181
|
4.5
|
27.2
|
1.0
|
|
O
|
D:HOH522
|
4.5
|
30.7
|
1.0
|
|
OD1
|
D:ASP185
|
4.6
|
34.4
|
1.0
|
|
CA
|
D:HIS183
|
4.7
|
29.2
|
1.0
|
|
CB
|
D:ALA182
|
4.9
|
25.5
|
1.0
|
|
CA
|
D:ASP181
|
4.9
|
26.6
|
1.0
|
|
CG
|
D:GLU309
|
4.9
|
24.8
|
1.0
|
|
CA
|
D:ALA182
|
5.0
|
26.1
|
1.0
|
|
Manganese binding site 8 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 8 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn402
b:36.6
occ:1.00
|
OD2
|
D:ASP181
|
2.0
|
32.7
|
1.0
|
|
O
|
D:HOH505
|
2.1
|
27.9
|
1.0
|
|
ND1
|
D:HIS157
|
2.2
|
30.6
|
1.0
|
|
OD2
|
D:ASP185
|
2.2
|
41.2
|
1.0
|
|
OD2
|
D:ASP266
|
2.2
|
29.9
|
1.0
|
|
CG
|
D:ASP181
|
2.9
|
28.1
|
1.0
|
|
CG
|
D:ASP185
|
3.0
|
35.7
|
1.0
|
|
CG
|
D:HIS157
|
3.0
|
28.8
|
1.0
|
|
OD1
|
D:ASP185
|
3.1
|
34.4
|
1.0
|
|
OD1
|
D:ASP181
|
3.1
|
28.5
|
1.0
|
|
MN
|
D:MN401
|
3.2
|
29.4
|
1.0
|
|
CE1
|
D:HIS157
|
3.2
|
30.4
|
1.0
|
|
CB
|
D:HIS157
|
3.2
|
27.4
|
1.0
|
|
CG
|
D:ASP266
|
3.3
|
27.1
|
1.0
|
|
CB
|
D:ASP266
|
3.7
|
26.4
|
1.0
|
|
O
|
D:HOH569
|
3.9
|
39.0
|
1.0
|
|
CD2
|
D:HIS157
|
4.1
|
29.1
|
1.0
|
|
NE2
|
D:HIS157
|
4.2
|
29.2
|
1.0
|
|
CB
|
D:ASP181
|
4.3
|
27.2
|
1.0
|
|
NE2
|
D:HIS179
|
4.3
|
28.5
|
1.0
|
|
CB
|
D:ASP185
|
4.4
|
35.0
|
1.0
|
|
OD1
|
D:ASP266
|
4.4
|
26.2
|
1.0
|
|
O
|
D:HIS197
|
4.5
|
38.7
|
1.0
|
|
O
|
D:HIS183
|
4.6
|
29.8
|
1.0
|
|
CG
|
D:GLU309
|
4.7
|
24.8
|
1.0
|
|
CA
|
D:HIS157
|
4.7
|
27.2
|
1.0
|
|
ND1
|
D:HIS183
|
4.9
|
32.5
|
1.0
|
|
CB
|
D:HIS183
|
4.9
|
30.1
|
1.0
|
|
OD1
|
D:ASP268
|
5.0
|
26.5
|
1.0
|
|
Manganese binding site 9 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 9 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn401
b:25.7
occ:1.00
|
O
|
E:HOH510
|
2.2
|
24.3
|
1.0
|
|
OD2
|
E:ASP266
|
2.2
|
25.5
|
1.0
|
|
OD1
|
E:ASP268
|
2.2
|
24.8
|
1.0
|
|
OD1
|
E:ASP181
|
2.2
|
24.3
|
1.0
|
|
OD2
|
E:ASP268
|
2.3
|
25.5
|
1.0
|
|
ND1
|
E:HIS183
|
2.3
|
24.6
|
1.0
|
|
O
|
E:HOH570
|
2.5
|
19.9
|
0.5
|
|
CG
|
E:ASP268
|
2.6
|
23.2
|
1.0
|
|
CG
|
E:ASP266
|
3.0
|
23.5
|
1.0
|
|
CE1
|
E:HIS183
|
3.1
|
24.2
|
1.0
|
|
MN
|
E:MN402
|
3.2
|
27.9
|
1.0
|
|
CG
|
E:ASP181
|
3.3
|
22.1
|
1.0
|
|
OD1
|
E:ASP266
|
3.4
|
23.2
|
1.0
|
|
CG
|
E:HIS183
|
3.5
|
23.4
|
1.0
|
|
OD2
|
E:ASP181
|
3.7
|
23.8
|
1.0
|
|
O
|
E:HOH570
|
3.9
|
19.0
|
0.5
|
|
CB
|
E:HIS183
|
4.0
|
22.8
|
1.0
|
|
CB
|
E:ASP268
|
4.1
|
23.5
|
1.0
|
|
CB
|
E:ASP266
|
4.2
|
23.3
|
1.0
|
|
N
|
E:ALA182
|
4.3
|
20.2
|
1.0
|
|
N
|
E:HIS183
|
4.3
|
21.3
|
1.0
|
|
NE2
|
E:HIS183
|
4.4
|
23.3
|
1.0
|
|
CB
|
E:ASP181
|
4.6
|
22.0
|
1.0
|
|
O
|
E:HOH536
|
4.6
|
26.7
|
1.0
|
|
OD1
|
E:ASP185
|
4.6
|
28.9
|
1.0
|
|
CD2
|
E:HIS183
|
4.6
|
23.4
|
1.0
|
|
CA
|
E:HIS183
|
4.8
|
22.4
|
1.0
|
|
CB
|
E:ALA182
|
4.8
|
20.7
|
1.0
|
|
CA
|
E:ASP181
|
4.9
|
20.6
|
1.0
|
|
CA
|
E:ASP268
|
5.0
|
22.3
|
1.0
|
|
Manganese binding site 10 out
of 12 in 6vss
Go back to
Manganese Binding Sites List in 6vss
Manganese binding site 10 out
of 12 in the Arginase From Medicago Truncatula
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Arginase From Medicago Truncatula within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn402
b:27.9
occ:1.00
|
O
|
E:HOH510
|
2.1
|
24.3
|
1.0
|
|
OD2
|
E:ASP181
|
2.1
|
23.8
|
1.0
|
|
OD2
|
E:ASP185
|
2.2
|
32.6
|
1.0
|
|
ND1
|
E:HIS157
|
2.2
|
24.9
|
1.0
|
|
OD2
|
E:ASP266
|
2.2
|
25.5
|
1.0
|
|
O
|
E:HOH570
|
2.9
|
19.0
|
0.5
|
|
CG
|
E:ASP185
|
3.0
|
28.3
|
1.0
|
|
CG
|
E:ASP181
|
3.0
|
22.1
|
1.0
|
|
CG
|
E:HIS157
|
3.1
|
23.7
|
1.0
|
|
CE1
|
E:HIS157
|
3.1
|
24.7
|
1.0
|
|
OD1
|
E:ASP185
|
3.2
|
28.9
|
1.0
|
|
OD1
|
E:ASP181
|
3.2
|
24.3
|
1.0
|
|
MN
|
E:MN401
|
3.2
|
25.7
|
1.0
|
|
CG
|
E:ASP266
|
3.3
|
23.5
|
1.0
|
|
CB
|
E:HIS157
|
3.4
|
23.5
|
1.0
|
|
O
|
E:HOH570
|
3.7
|
19.9
|
0.5
|
|
CB
|
E:ASP266
|
3.7
|
23.3
|
1.0
|
|
CD2
|
E:HIS157
|
4.2
|
24.0
|
1.0
|
|
NE2
|
E:HIS157
|
4.2
|
24.1
|
1.0
|
|
CB
|
E:ASP185
|
4.4
|
26.8
|
1.0
|
|
O
|
E:HIS197
|
4.4
|
30.0
|
1.0
|
|
CB
|
E:ASP181
|
4.4
|
22.0
|
1.0
|
|
OD1
|
E:ASP266
|
4.5
|
23.2
|
1.0
|
|
NE2
|
E:HIS179
|
4.5
|
22.1
|
1.0
|
|
CG
|
E:GLU309
|
4.7
|
21.7
|
1.0
|
|
O
|
E:HIS183
|
4.7
|
23.2
|
1.0
|
|
CA
|
E:HIS157
|
4.8
|
23.4
|
1.0
|
|
ND1
|
E:HIS183
|
4.9
|
24.6
|
1.0
|
|
OE2
|
E:GLU309
|
4.9
|
21.8
|
1.0
|
|
OD1
|
E:ASP268
|
4.9
|
24.8
|
1.0
|
|
CB
|
E:HIS183
|
5.0
|
22.8
|
1.0
|
|
Reference:
B.Sekula,
B.Sekula.
N/A N/A.
ISSN: ESSN 1664-462X
PubMed: 32754173
DOI: 10.3389/FPLS.2020.00987
Page generated: Sun Oct 6 07:36:43 2024
|
