Manganese in PDB 6vjh: The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192

The structure of The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192, PDB code: 6vjh was solved by M.G.Cuypers, P.J.Slavish, Z.Rankovic, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.46 / 2.55
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	88.971, 88.971, 133.396, 90, 90, 90
R / Rfree (%)	22.5 / 24.7

The binding sites of Manganese atom in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192 (pdb code 6vjh). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192, PDB code: 6vjh:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn203 b:68.0 occ:1.00 OD2 A:ASP108 2.0 78.9 1.0 O02 A:QZM201 2.0 88.0 1.0 OE2 A:GLU119 2.1 62.4 1.0 O03 A:QZM201 2.2 81.2 1.0 NE2 A:HIS41 2.2 61.3 1.0 O A:ILE120 2.2 69.1 1.0 C09 A:QZM201 2.7 67.3 1.0 C10 A:QZM201 2.8 69.7 1.0 CE1 A:HIS41 2.8 69.2 1.0 CG A:ASP108 2.9 75.2 1.0 CD A:GLU119 3.1 71.3 1.0 OD1 A:ASP108 3.2 63.7 1.0 CD2 A:HIS41 3.4 75.7 1.0 C A:ILE120 3.4 57.8 1.0 OE1 A:GLU119 3.5 82.8 1.0 MN A:MN204 3.6 82.6 1.0 N A:ILE120 3.6 62.4 1.0 O A:HOH303 3.9 71.8 1.0 CA A:ILE120 4.0 53.9 1.0 ND1 A:HIS41 4.0 74.7 1.0 C08 A:QZM201 4.0 89.1 1.0 N02 A:QZM201 4.1 73.3 1.0 CG A:HIS41 4.3 46.7 1.0 CB A:ASP108 4.3 75.1 1.0 CB A:ILE120 4.3 57.1 1.0 CG A:GLU119 4.4 57.8 1.0 CE A:LYS134 4.4 75.4 1.0 N A:GLY121 4.5 64.0 1.0 OE1 A:GLU80 4.5 91.0 1.0 C A:GLU119 4.6 59.9 1.0 O01 A:QZM201 4.6 84.3 1.0 CA A:GLY121 4.8 47.2 1.0 C07 A:QZM201 4.9 85.1 1.0 CA A:GLU119 5.0 61.8 1.0

Manganese binding site 2 out of 2 in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of the 2009 H1N1/California Pa Endonuclease Wild Type in Complex with SJ000986192 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn204 b:82.6 occ:1.00 O01 A:QZM201 1.8 84.3 1.0 OE1 A:GLU80 2.0 91.0 1.0 O A:HOH303 2.1 71.8 1.0 OD1 A:ASP108 2.1 63.7 1.0 O02 A:QZM201 2.2 88.0 1.0 O A:HOH302 2.3 68.3 1.0 C07 A:QZM201 2.7 85.1 1.0 CD A:GLU80 2.9 84.2 1.0 C09 A:QZM201 3.1 67.3 1.0 CG A:ASP108 3.3 75.2 1.0 C08 A:QZM201 3.3 89.1 1.0 OE2 A:GLU80 3.4 88.1 1.0 MN A:MN203 3.6 68.0 1.0 OD2 A:ASP108 3.8 78.9 1.0 CE1 A:HIS41 3.8 69.2 1.0 O A:PRO107 3.9 84.9 1.0 N01 A:QZM201 4.0 99.3 1.0 CG A:GLU80 4.1 71.2 1.0 OE1 A:GLU119 4.3 82.8 1.0 NE2 A:HIS41 4.4 61.3 1.0 O A:LEU106 4.4 76.6 1.0 C10 A:QZM201 4.4 69.7 1.0 C A:PRO107 4.5 83.6 1.0 OE2 A:GLU119 4.5 62.4 1.0 CB A:ASP108 4.5 75.1 1.0 C06 A:QZM201 4.5 109.5 1.0 CB A:GLU80 4.6 55.3 1.0 CA A:ASP108 4.6 56.7 1.0 N03 A:QZM201 4.6 95.2 1.0 ND1 A:HIS41 4.7 74.7 1.0 N A:ASP108 4.8 72.4 1.0 CD A:GLU119 4.8 71.3 1.0 O03 A:QZM201 4.9 81.2 1.0

M.G.Cuypers, P.J.Slavish, Z.Rankovic, S.W.White. The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000986192 To Be Published.