Manganese in PDB 6vg9: The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248

The structure of The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248, PDB code: 6vg9 was solved by M.G.Cuypers, P.J.Slavish, Z.Rankovic, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.02 / 2.75
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.571, 90.571, 133.829, 90, 90, 90
R / Rfree (%)	23.8 / 24.8

The binding sites of Manganese atom in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248 (pdb code 6vg9). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248, PDB code: 6vg9:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:71.1 occ:1.00 O02 A:QVV204 1.7 79.3 1.0 OD2 A:ASP108 2.0 72.5 1.0 O A:ILE120 2.1 66.5 1.0 OE2 A:GLU119 2.2 70.2 1.0 NE2 A:HIS41 2.3 66.9 1.0 O01 A:QVV204 2.3 77.8 1.0 C02 A:QVV204 2.7 79.1 1.0 C01 A:QVV204 2.8 77.8 1.0 CE1 A:HIS41 2.9 71.1 1.0 CG A:ASP108 3.0 66.2 1.0 CD A:GLU119 3.2 68.5 1.0 OD1 A:ASP108 3.3 68.8 1.0 C A:ILE120 3.3 64.6 1.0 CD2 A:HIS41 3.4 68.2 1.0 OE1 A:GLU119 3.6 72.1 1.0 MN A:MN202 3.7 73.4 1.0 N A:ILE120 3.8 63.0 1.0 C03 A:QVV204 4.0 85.0 1.0 CA A:ILE120 4.1 60.5 1.0 ND1 A:HIS41 4.1 70.8 1.0 O A:HOH301 4.2 74.4 1.0 N01 A:QVV204 4.2 89.1 1.0 CG A:GLU119 4.3 68.1 1.0 CB A:ASP108 4.4 66.5 1.0 N A:GLY121 4.4 70.0 1.0 CG A:HIS41 4.4 63.0 1.0 O03 A:QVV204 4.4 81.8 1.0 CB A:ILE120 4.6 64.1 1.0 CA A:GLY121 4.6 69.5 1.0 C04 A:QVV204 4.7 85.0 1.0 C A:GLU119 4.7 64.0 1.0

Manganese binding site 2 out of 2 in the The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn202 b:73.4 occ:1.00 O A:HOH303 1.9 73.3 1.0 O03 A:QVV204 1.9 81.8 1.0 OD1 A:ASP108 2.1 68.8 1.0 O02 A:QVV204 2.5 79.3 1.0 C04 A:QVV204 2.8 85.0 1.0 OE1 A:GLU80 3.0 74.9 1.0 O A:HOH301 3.0 74.4 1.0 CG A:ASP108 3.1 66.2 1.0 C02 A:QVV204 3.3 79.1 1.0 C03 A:QVV204 3.4 85.0 1.0 OD2 A:ASP108 3.6 72.5 1.0 CD A:GLU80 3.6 79.1 1.0 MN A:MN201 3.7 71.1 1.0 CE1 A:HIS41 3.7 71.1 1.0 N02 A:QVV204 3.9 94.4 1.0 O A:PRO107 4.1 73.3 1.0 C05 A:QVV204 4.2 95.7 1.0 OE2 A:GLU80 4.2 87.9 1.0 CG A:GLU80 4.3 65.4 1.0 CB A:GLU80 4.3 63.1 1.0 CB A:ASP108 4.3 66.5 1.0 NE2 A:HIS41 4.4 66.9 1.0 OE1 A:GLU119 4.4 72.1 1.0 O A:LEU106 4.4 75.3 1.0 C A:PRO107 4.5 73.8 1.0 CA A:ASP108 4.5 66.9 1.0 C01 A:QVV204 4.6 77.8 1.0 OE2 A:GLU119 4.6 70.2 1.0 N A:ASP108 4.6 71.0 1.0 ND1 A:HIS41 4.7 70.8 1.0 N03 A:QVV204 4.7 89.8 1.0 O A:HOH304 5.0 83.9 1.0 CD A:GLU119 5.0 68.5 1.0

M.G.Cuypers, P.J.Slavish, Z.Rankovic, S.W.White. The Crystal Structure of the 2009 H1N1/California Pa Endonuclease I38T Mutant in Complex with SJ000988248 To Be Published.