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Manganese in PDB 6vf7: Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min):
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min), PDB code: 6vf7
was solved by
J.A.Jamsen,
S.H.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 35.04 / 1.87 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 60.159, 68.927, 110.446, 90, 90, 90 |
| R / Rfree (%) | 16.6 / 19.7 |
Other elements in 6vf7:
The structure of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) also contains other interesting chemical elements:
| Sodium | (Na) | 1 atom |
Manganese Binding Sites:
The binding sites of Manganese atom in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
(pdb code 6vf7). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min), PDB code: 6vf7:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Manganese where determined in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min), PDB code: 6vf7:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Manganese binding site 1 out of 8 in 6vf7
Go back to
Manganese Binding Sites List in 6vf7
Manganese binding site 1 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Manganese binding site 2 out of 8 in 6vf7
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Manganese Binding Sites List in 6vf7
Manganese binding site 2 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Manganese binding site 3 out of 8 in 6vf7
Go back to
Manganese Binding Sites List in 6vf7
Manganese binding site 3 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Manganese binding site 4 out of 8 in 6vf7
Go back to
Manganese Binding Sites List in 6vf7
Manganese binding site 4 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Manganese binding site 5 out of 8 in 6vf7
Go back to
Manganese Binding Sites List in 6vf7
Manganese binding site 5 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Manganese binding site 6 out of 8 in 6vf7
Go back to
Manganese Binding Sites List in 6vf7
Manganese binding site 6 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Manganese binding site 7 out of 8 in 6vf7
Go back to
Manganese Binding Sites List in 6vf7
Manganese binding site 7 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Manganese binding site 8 out of 8 in 6vf7
Go back to
Manganese Binding Sites List in 6vf7
Manganese binding site 8 out
of 8 in the Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) within 5.0Å range:
|
Reference:
J.A.Jamsen,
A.Sassa,
W.A.Beard,
S.H.Wilson.
Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min) To Be Published.
Page generated: Sun Oct 6 07:32:12 2024
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