Manganese in PDB 6vdw: Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol

The structure of Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol, PDB code: 6vdw was solved by R.A.Ghiladi, V.S.De Serrano, A.Mcguire, T.Malewschik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.58 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.301, 67.767, 67.609, 90, 90, 90
R / Rfree (%)	16.4 / 19.9

The binding sites of Manganese atom in the Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol (pdb code 6vdw). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol, PDB code: 6vdw:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:15.4 occ:1.00 MN A:MNR201 0.0 15.4 1.0 NB A:MNR201 2.0 16.9 1.0 NC A:MNR201 2.0 15.4 1.0 NA A:MNR201 2.0 17.2 1.0 ND A:MNR201 2.1 14.5 1.0 NE2 A:HIS89 2.3 16.8 1.0 C4A A:MNR201 3.0 14.9 1.0 C4D A:MNR201 3.1 17.4 1.0 C4C A:MNR201 3.1 16.0 1.0 C1A A:MNR201 3.1 15.8 1.0 C1C A:MNR201 3.1 14.7 1.0 C1D A:MNR201 3.2 15.6 1.0 C4B A:MNR201 3.2 15.2 1.0 C1B A:MNR201 3.2 12.3 1.0 CD2 A:HIS89 3.2 18.4 1.0 CE1 A:HIS89 3.3 17.4 1.0 CHA A:MNR201 3.3 16.8 1.0 CHB A:MNR201 3.4 13.9 1.0 CHC A:MNR201 3.4 15.3 1.0 CHD A:MNR201 3.5 17.6 1.0 CG2 A:VAL59 4.1 14.3 1.0 C2D A:MNR201 4.2 18.1 1.0 C2B A:MNR201 4.2 13.8 1.0 C2 A:NPO202 4.2 19.4 1.0 C2A A:MNR201 4.3 14.6 1.0 C3A A:MNR201 4.3 17.4 1.0 C3D A:MNR201 4.3 18.6 1.0 C3C A:MNR201 4.4 16.7 1.0 ND1 A:HIS89 4.4 15.1 1.0 C3B A:MNR201 4.4 13.6 1.0 CG A:HIS89 4.4 16.4 1.0 C2C A:MNR201 4.4 17.2 1.0 CE A:MET86 4.7 19.4 1.0 O2 A:NPO202 4.7 24.1 1.0 C3 A:NPO202 4.8 17.2 1.0 CG1 A:VAL59 4.8 15.0 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Dehaloperoxidase B in Complex with Cofactor Manganese(III) Porphyrin and Substrate 4-Nitrophenol within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn201 b:13.8 occ:1.00 MN B:MNR201 0.0 13.8 1.0 NB B:MNR201 2.0 14.4 1.0 NC B:MNR201 2.0 14.2 1.0 NA B:MNR201 2.1 13.7 1.0 ND B:MNR201 2.1 14.2 1.0 NE2 B:HIS89 2.2 12.9 1.0 C4A B:MNR201 3.0 13.9 1.0 C4D B:MNR201 3.1 14.9 1.0 C1C B:MNR201 3.1 14.8 1.0 C4C B:MNR201 3.1 12.9 1.0 C1D B:MNR201 3.1 14.4 1.0 C1A B:MNR201 3.2 12.5 1.0 C4B B:MNR201 3.2 13.7 1.0 C1B B:MNR201 3.2 12.6 1.0 CE1 B:HIS89 3.2 13.1 1.0 CD2 B:HIS89 3.2 15.3 1.0 CHA B:MNR201 3.4 12.3 1.0 CHC B:MNR201 3.4 14.7 1.0 CHB B:MNR201 3.4 13.3 1.0 CHD B:MNR201 3.5 16.3 1.0 C6 B:NPO202 4.1 18.1 1.0 C2D B:MNR201 4.2 17.2 1.0 C2B B:MNR201 4.2 12.1 1.0 C3A B:MNR201 4.3 14.9 1.0 C3D B:MNR201 4.3 16.0 1.0 C2A B:MNR201 4.3 14.9 1.0 CG2 B:VAL59 4.3 14.0 1.0 ND1 B:HIS89 4.3 13.2 1.0 C3B B:MNR201 4.4 12.3 1.0 CG B:HIS89 4.4 13.6 1.0 C3C B:MNR201 4.4 14.5 1.0 C2C B:MNR201 4.5 14.3 1.0 C5 B:NPO202 4.7 18.4 1.0 O3 B:NPO202 4.7 22.1 1.0 CE B:MET86 4.7 19.9 1.0 CG1 B:VAL59 4.8 12.1 1.0 C1 B:NPO202 5.0 17.7 1.0

A.H.Mcguire, A.R.Petit, J.Kang, T.Malewschik, V.De Serrano, L.M.Carey, R.A.Ghiladi. Nonnative Heme Incorporation Into Multifunctional Globin Increases Peroxygenase Activity An Order and Magnitude Compared to Native Enzyme To Be Published.