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Manganese in PDB 6vb8: Crystal Structure of A Lectin From Canavalia Brasiliensis Seed (Conbr) Complexed with Indole-3-Acetic Acid

Protein crystallography data

The structure of Crystal Structure of A Lectin From Canavalia Brasiliensis Seed (Conbr) Complexed with Indole-3-Acetic Acid, PDB code: 6vb8 was solved by E.H.S.Bezerra, P.P.Queiroz, F.M.S.Da Silva, M.S.Girao, M.V.Sales, C.P.S.Paiva, V.N.Freire, B.A.M.Rocha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.69 / 2.20
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.806, 72.427, 99.272, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.6

Other elements in 6vb8:

The structure of Crystal Structure of A Lectin From Canavalia Brasiliensis Seed (Conbr) Complexed with Indole-3-Acetic Acid also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of A Lectin From Canavalia Brasiliensis Seed (Conbr) Complexed with Indole-3-Acetic Acid (pdb code 6vb8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of A Lectin From Canavalia Brasiliensis Seed (Conbr) Complexed with Indole-3-Acetic Acid, PDB code: 6vb8:

Manganese binding site 1 out of 1 in 6vb8

Go back to Manganese Binding Sites List in 6vb8
Manganese binding site 1 out of 1 in the Crystal Structure of A Lectin From Canavalia Brasiliensis Seed (Conbr) Complexed with Indole-3-Acetic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of A Lectin From Canavalia Brasiliensis Seed (Conbr) Complexed with Indole-3-Acetic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn303

b:60.1
occ:1.00
OD2 A:ASP10 2.2 43.9 1.0
O A:HOH412 2.2 38.4 1.0
OE2 A:GLU8 2.2 40.1 1.0
OD1 A:ASP19 2.2 49.9 1.0
NE2 A:HIS24 2.3 46.6 1.0
O A:HOH417 2.3 49.9 1.0
CD A:GLU8 3.1 39.6 1.0
CD2 A:HIS24 3.2 46.1 1.0
CG A:ASP19 3.2 51.6 1.0
CG A:ASP10 3.2 43.3 1.0
CE1 A:HIS24 3.3 47.8 1.0
OE1 A:GLU8 3.4 40.7 1.0
OD2 A:ASP19 3.6 51.3 1.0
CB A:ASP10 3.7 41.7 1.0
O A:HOH415 3.9 45.8 1.0
O A:HOH439 3.9 60.5 1.0
OG A:SER34 4.1 42.4 1.0
CA A:CA302 4.2 43.9 1.0
OD1 A:ASP10 4.3 43.3 1.0
CG A:HIS24 4.4 46.4 1.0
ND1 A:HIS24 4.4 47.6 1.0
CB A:ASP19 4.4 53.5 1.0
O A:VAL32 4.5 48.5 1.0
CG A:GLU8 4.5 38.4 1.0
CA A:ASP19 4.7 54.3 1.0

Reference:

E.H.S.Bezerra, M.V.Sales, M.S.Girao, F.M.S.Da Silva, P.P.Queiroz, C.P.S.Paiva, V.N.Freire, B.A.M.Rocha. Structural Insights Into Phytohormone Interaction to Plant Lectin Conbr To Be Published.
Page generated: Sun Oct 6 07:25:49 2024

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