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Manganese in PDB 6v5k: Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp*

Enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp*

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp*:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp*, PDB code: 6v5k was solved by H.Jung, S.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.46 / 2.69
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 98.911, 98.911, 82.138, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 24.2

Other elements in 6v5k:

The structure of Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp* also contains other interesting chemical elements:

Fluorine (F) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp* (pdb code 6v5k). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp*, PDB code: 6v5k:

Manganese binding site 1 out of 1 in 6v5k

Go back to Manganese Binding Sites List in 6v5k
Manganese binding site 1 out of 1 in the Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp*


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Complexed with N7- Nitrogen Half-Mustard Guanine (Nhmg) and Dctp* within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn502

b:69.2
occ:1.00
O1G A:0KX501 2.2 57.0 1.0
O A:MET14 2.3 53.7 1.0
OD1 A:ASP13 2.3 55.5 1.0
OD2 A:ASP115 2.4 59.0 1.0
O1B A:0KX501 2.5 64.2 1.0
O2A A:0KX501 2.6 62.8 1.0
N3A A:0KX501 3.2 69.2 1.0
PB A:0KX501 3.3 79.3 1.0
CG A:ASP13 3.3 58.7 1.0
O3B A:0KX501 3.4 66.0 1.0
PG A:0KX501 3.4 58.9 1.0
PA A:0KX501 3.5 60.6 1.0
NZ A:LYS231 3.5 60.4 1.0
C A:MET14 3.5 51.2 1.0
CG A:ASP115 3.6 61.1 1.0
OD2 A:ASP13 3.7 63.1 1.0
OD1 A:ASP115 4.1 61.8 1.0
O5' A:0KX501 4.2 66.0 1.0
C5' A:0KX501 4.2 58.9 1.0
O3G A:0KX501 4.3 57.1 1.0
N A:MET14 4.3 54.1 1.0
CE A:LYS231 4.3 62.5 1.0
O2G A:0KX501 4.4 59.9 1.0
CA A:MET14 4.4 50.8 1.0
C A:ASP13 4.5 55.3 1.0
N A:ASP15 4.5 46.8 1.0
OE1 A:GLU116 4.5 62.1 1.0
CB A:ASP13 4.6 59.7 1.0
N A:CYS16 4.6 53.9 1.0
CA A:ASP15 4.6 51.5 1.0
O2B A:0KX501 4.7 68.1 1.0
O1A A:0KX501 4.7 67.7 1.0
C A:ASP15 4.8 54.6 1.0
CB A:MET14 4.8 48.4 1.0
O A:ASP13 4.8 56.0 1.0
CB A:ASP115 4.8 53.2 1.0
CA A:ASP13 4.9 53.4 1.0
N A:PHE17 4.9 55.4 1.0
O A:ASP115 5.0 53.5 1.0

Reference:

H.Jung, S.Lee. Crystal Structure of Human Dna Polymerase Eta Complexed with N7-Nitrogen Half-Mustard Guanine (Nhmg) and Dctp* To Be Published.
Page generated: Sun Oct 6 07:18:47 2024

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