Manganese in PDB 6v56: The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494

The structure of The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494, PDB code: 6v56 was solved by M.G.Cuypers, P.J.Slavish, Z.Rankovic, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.34 / 2.75
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	89.546, 89.546, 132.78, 90, 90, 90
R / Rfree (%)	24.4 / 26.2

The binding sites of Manganese atom in the The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494 (pdb code 6v56). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494, PDB code: 6v56:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn203 b:64.5 occ:1.00 OD2 A:ASP89 2.1 70.0 1.0 O2 A:QPY201 2.1 83.9 1.0 O A:ILE101 2.1 71.0 1.0 OE2 A:GLU100 2.1 68.2 1.0 O1 A:QPY201 2.1 73.3 1.0 NE2 A:HIS41 2.3 63.3 1.0 C2 A:QPY201 2.7 84.8 1.0 C1 A:QPY201 2.7 80.7 1.0 CE1 A:HIS41 2.9 68.2 1.0 CG A:ASP89 3.0 61.6 1.0 CD A:GLU100 3.1 65.3 1.0 OD1 A:ASP89 3.2 65.7 1.0 C A:ILE101 3.2 69.6 1.0 CD2 A:HIS41 3.4 70.7 1.0 O A:HOH302 3.4 66.6 1.0 N A:ILE101 3.5 60.4 1.0 OE1 A:GLU100 3.7 73.8 1.0 MN A:MN204 3.8 80.2 1.0 CA A:ILE101 3.9 59.4 1.0 N1 A:QPY201 4.0 90.1 1.0 C3 A:QPY201 4.1 93.3 1.0 ND1 A:HIS41 4.1 69.3 1.0 CG A:GLU100 4.2 64.3 1.0 CB A:ILE101 4.3 60.5 1.0 N A:GLY102 4.3 62.2 1.0 CG A:HIS41 4.4 64.3 1.0 CB A:ASP89 4.4 59.2 1.0 C A:GLU100 4.5 61.1 1.0 O A:HOH309 4.6 73.3 1.0 CA A:GLY102 4.6 61.4 1.0 O3 A:QPY201 4.7 84.9 1.0 CA A:GLU100 4.8 64.1 1.0 C4 A:QPY201 4.9 85.2 1.0

Manganese binding site 2 out of 2 in the The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Crystal Structure of the 2009 H1N1 Pa Endonuclease Wild Type in Complex with SJ000985494 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn204 b:80.2 occ:1.00 O3 A:QPY201 1.8 84.9 1.0 OD1 A:ASP89 2.1 65.7 1.0 O2 A:QPY201 2.1 83.9 1.0 O A:HOH302 2.2 66.6 1.0 O A:HOH301 2.3 68.6 1.0 OE1 A:GLU61 2.9 82.0 1.0 C4 A:QPY201 2.9 85.2 1.0 CD A:GLU61 3.1 74.5 1.0 C2 A:QPY201 3.2 84.8 1.0 CG A:ASP89 3.2 61.6 1.0 C3 A:QPY201 3.4 93.3 1.0 OE2 A:GLU61 3.5 88.4 1.0 CE1 A:HIS41 3.7 68.2 1.0 MN A:MN203 3.8 64.5 1.0 OD2 A:ASP89 3.8 70.0 1.0 CG A:GLU61 3.8 63.6 1.0 CB A:GLU61 4.0 59.8 1.0 O A:PRO88 4.1 82.2 1.0 N2 A:QPY201 4.1 82.8 1.0 O A:LEU87 4.3 75.2 1.0 CB A:ASP89 4.4 59.2 1.0 NE2 A:HIS41 4.5 63.3 1.0 C A:PRO88 4.5 64.7 1.0 C5 A:QPY201 4.5 86.0 1.0 C1 A:QPY201 4.5 80.7 1.0 CA A:ASP89 4.5 63.1 1.0 OE1 A:GLU100 4.6 73.8 1.0 C18 A:QPY201 4.6 99.8 1.0 OE2 A:GLU100 4.6 68.2 1.0 ND1 A:HIS41 4.7 69.3 1.0 N A:ASP89 4.7 60.3 1.0 CA A:GLU61 4.8 67.0 1.0 N8 A:QPY201 4.8 92.6 1.0 O1 A:QPY201 5.0 73.3 1.0 C6 A:QPY201 5.0 97.3 1.0

M.G.Cuypers, P.J.Slavish, Z.Rankovic, S.W.White. The Crystal Structure of the 2009 H1N1 Pa Endonuclease Mutant I38T in Complex with SJ000985494 To Be Published.