Manganese in PDB 6s8b: Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1

The structure of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Manganese atom in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 (pdb code 6s8b). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1, PDB code: 6s8b:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ K:Mn1104 b:92.2 occ:1.00 O1G K:ANP1103 1.7 73.3 1.0 O2B K:ANP1103 1.7 73.3 1.0 O1A K:ANP1103 1.9 73.3 1.0 OD1 K:ASP650 2.3 54.9 1.0 O K:SER651 3.0 61.1 1.0 CG K:ASP650 3.0 54.9 1.0 PB K:ANP1103 3.1 73.3 1.0 OD2 K:ASP650 3.1 54.9 1.0 PA K:ANP1103 3.1 73.3 1.0 PG K:ANP1103 3.1 73.3 1.0 NZ K:LYS885 3.4 57.8 1.0 O3A K:ANP1103 3.6 73.3 1.0 C K:SER651 3.7 61.1 1.0 N3B K:ANP1103 3.8 73.3 1.0 O2A K:ANP1103 3.9 73.3 1.0 O2G K:ANP1103 4.0 73.3 1.0 O3G K:ANP1103 4.1 73.3 1.0 N K:SER651 4.2 61.1 1.0 O1B K:ANP1103 4.2 73.3 1.0 C3' K:ANP1103 4.3 73.3 1.0 O5' K:ANP1103 4.3 73.3 1.0 CA K:SER651 4.4 61.1 1.0 CB K:ASP650 4.5 54.9 1.0 C2' K:ANP1103 4.5 73.3 1.0 N K:ASP652 4.5 67.9 1.0 CB K:SER651 4.6 61.1 1.0 OD1 K:ASP803 4.6 55.1 1.0 C K:ASP650 4.7 54.9 1.0 N K:TYR653 4.8 73.5 1.0 CE K:LYS885 4.8 57.8 1.0 CA K:ASP652 4.8 67.9 1.0 O2' K:ANP1103 4.8 73.3 1.0 C5' K:ANP1103 4.9 73.3 1.0 N K:LEU654 4.9 73.1 1.0 CB K:LEU654 5.0 73.1 1.0 CA K:ASP650 5.0 54.9 1.0

Manganese binding site 2 out of 3 in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ K:Mn1105 b:96.2 occ:1.00 O2A K:ANP1103 1.7 73.3 1.0 OE2 K:GLU882 2.9 53.6 1.0 PA K:ANP1103 3.0 73.3 1.0 OE1 K:GLU882 3.1 53.6 1.0 CD K:GLU882 3.4 53.6 1.0 O5' K:ANP1103 3.5 73.3 1.0 O3G K:ANP1103 3.6 73.3 1.0 O3A K:ANP1103 3.7 73.3 1.0 O1A K:ANP1103 4.2 73.3 1.0 PG K:ANP1103 4.6 73.3 1.0 N3B K:ANP1103 4.6 73.3 1.0 C5' K:ANP1103 4.8 73.3 1.0 PB K:ANP1103 4.8 73.3 1.0 O1G K:ANP1103 4.8 73.3 1.0 CG K:GLU882 4.9 53.6 1.0

Manganese binding site 3 out of 3 in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ K:Mn1106 b:73.4 occ:1.00 O3A K:ANP1102 2.0 62.9 1.0 O3G K:ANP1102 2.0 62.9 1.0 O K:THR207 2.2 63.1 1.0 O2B K:ANP1102 2.6 62.9 1.0 OD1 K:ASP206 2.8 71.2 1.0 PB K:ANP1102 2.9 62.9 1.0 PG K:ANP1102 3.2 62.9 1.0 PA K:ANP1102 3.3 62.9 1.0 C K:THR207 3.4 63.1 1.0 O1A K:ANP1102 3.5 62.9 1.0 N3B K:ANP1102 3.5 62.9 1.0 CG K:ASP206 3.5 71.2 1.0 OD2 K:ASP206 3.6 71.2 1.0 O1G K:ANP1102 3.9 62.9 1.0 CG2 K:VAL210 3.9 50.3 1.0 C5' K:ANP1102 4.0 62.9 1.0 O1B K:ANP1102 4.1 62.9 1.0 O5' K:ANP1102 4.1 62.9 1.0 O K:ILE208 4.1 60.5 1.0 C K:ILE208 4.2 60.5 1.0 O2A K:ANP1102 4.3 62.9 1.0 O2G K:ANP1102 4.3 62.9 1.0 N K:ILE208 4.3 60.5 1.0 N K:THR207 4.3 63.1 1.0 CA K:ILE208 4.4 60.5 1.0 CA K:THR207 4.4 63.1 1.0 CG2 K:THR207 4.5 63.1 1.0 C K:ASP206 4.7 71.2 1.0 N K:VAL210 4.7 50.3 1.0 CB K:VAL210 4.8 50.3 1.0 OG1 K:THR207 4.8 63.1 1.0 N K:GLY209 4.8 52.2 1.0 CB K:THR207 4.8 63.1 1.0 CB K:ASP206 4.9 71.2 1.0

N.Sofos, M.Feng, S.Stella, T.Pape, A.Fuglsang, J.Lin, Q.Huang, Y.Li, Q.She, G.Montoya. Structures of the Cmr-Beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B Crispr-Cas. Mol.Cell V. 79 741 2020.
ISSN: ISSN 1097-2765
PubMed: 32730741
DOI: 10.1016/J.MOLCEL.2020.07.008