Atomistry » Manganese » PDB 6rwz-6txf » 6s8b
Atomistry »
  Manganese »
    PDB 6rwz-6txf »
      6s8b »

Manganese in PDB 6s8b: Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1

Other elements in 6s8b:

The structure of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 (pdb code 6s8b). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1, PDB code: 6s8b:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 6s8b

Go back to Manganese Binding Sites List in 6s8b
Manganese binding site 1 out of 3 in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mn1104

b:92.2
occ:1.00
O1G K:ANP1103 1.7 73.3 1.0
O2B K:ANP1103 1.7 73.3 1.0
O1A K:ANP1103 1.9 73.3 1.0
OD1 K:ASP650 2.3 54.9 1.0
O K:SER651 3.0 61.1 1.0
CG K:ASP650 3.0 54.9 1.0
PB K:ANP1103 3.1 73.3 1.0
OD2 K:ASP650 3.1 54.9 1.0
PA K:ANP1103 3.1 73.3 1.0
PG K:ANP1103 3.1 73.3 1.0
NZ K:LYS885 3.4 57.8 1.0
O3A K:ANP1103 3.6 73.3 1.0
C K:SER651 3.7 61.1 1.0
N3B K:ANP1103 3.8 73.3 1.0
O2A K:ANP1103 3.9 73.3 1.0
O2G K:ANP1103 4.0 73.3 1.0
O3G K:ANP1103 4.1 73.3 1.0
N K:SER651 4.2 61.1 1.0
O1B K:ANP1103 4.2 73.3 1.0
C3' K:ANP1103 4.3 73.3 1.0
O5' K:ANP1103 4.3 73.3 1.0
CA K:SER651 4.4 61.1 1.0
CB K:ASP650 4.5 54.9 1.0
C2' K:ANP1103 4.5 73.3 1.0
N K:ASP652 4.5 67.9 1.0
CB K:SER651 4.6 61.1 1.0
OD1 K:ASP803 4.6 55.1 1.0
C K:ASP650 4.7 54.9 1.0
N K:TYR653 4.8 73.5 1.0
CE K:LYS885 4.8 57.8 1.0
CA K:ASP652 4.8 67.9 1.0
O2' K:ANP1103 4.8 73.3 1.0
C5' K:ANP1103 4.9 73.3 1.0
N K:LEU654 4.9 73.1 1.0
CB K:LEU654 5.0 73.1 1.0
CA K:ASP650 5.0 54.9 1.0

Manganese binding site 2 out of 3 in 6s8b

Go back to Manganese Binding Sites List in 6s8b
Manganese binding site 2 out of 3 in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mn1105

b:96.2
occ:1.00
O2A K:ANP1103 1.7 73.3 1.0
OE2 K:GLU882 2.9 53.6 1.0
PA K:ANP1103 3.0 73.3 1.0
OE1 K:GLU882 3.1 53.6 1.0
CD K:GLU882 3.4 53.6 1.0
O5' K:ANP1103 3.5 73.3 1.0
O3G K:ANP1103 3.6 73.3 1.0
O3A K:ANP1103 3.7 73.3 1.0
O1A K:ANP1103 4.2 73.3 1.0
PG K:ANP1103 4.6 73.3 1.0
N3B K:ANP1103 4.6 73.3 1.0
C5' K:ANP1103 4.8 73.3 1.0
PB K:ANP1103 4.8 73.3 1.0
O1G K:ANP1103 4.8 73.3 1.0
CG K:GLU882 4.9 53.6 1.0

Manganese binding site 3 out of 3 in 6s8b

Go back to Manganese Binding Sites List in 6s8b
Manganese binding site 3 out of 3 in the Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Cryo-Em Structure of the Type III-B Cmr-Beta Bound to Cognate Target Rna and Amppnp, State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mn1106

b:73.4
occ:1.00
O3A K:ANP1102 2.0 62.9 1.0
O3G K:ANP1102 2.0 62.9 1.0
O K:THR207 2.2 63.1 1.0
O2B K:ANP1102 2.6 62.9 1.0
OD1 K:ASP206 2.8 71.2 1.0
PB K:ANP1102 2.9 62.9 1.0
PG K:ANP1102 3.2 62.9 1.0
PA K:ANP1102 3.3 62.9 1.0
C K:THR207 3.4 63.1 1.0
O1A K:ANP1102 3.5 62.9 1.0
N3B K:ANP1102 3.5 62.9 1.0
CG K:ASP206 3.5 71.2 1.0
OD2 K:ASP206 3.6 71.2 1.0
O1G K:ANP1102 3.9 62.9 1.0
CG2 K:VAL210 3.9 50.3 1.0
C5' K:ANP1102 4.0 62.9 1.0
O1B K:ANP1102 4.1 62.9 1.0
O5' K:ANP1102 4.1 62.9 1.0
O K:ILE208 4.1 60.5 1.0
C K:ILE208 4.2 60.5 1.0
O2A K:ANP1102 4.3 62.9 1.0
O2G K:ANP1102 4.3 62.9 1.0
N K:ILE208 4.3 60.5 1.0
N K:THR207 4.3 63.1 1.0
CA K:ILE208 4.4 60.5 1.0
CA K:THR207 4.4 63.1 1.0
CG2 K:THR207 4.5 63.1 1.0
C K:ASP206 4.7 71.2 1.0
N K:VAL210 4.7 50.3 1.0
CB K:VAL210 4.8 50.3 1.0
OG1 K:THR207 4.8 63.1 1.0
N K:GLY209 4.8 52.2 1.0
CB K:THR207 4.8 63.1 1.0
CB K:ASP206 4.9 71.2 1.0

Reference:

N.Sofos, M.Feng, S.Stella, T.Pape, A.Fuglsang, J.Lin, Q.Huang, Y.Li, Q.She, G.Montoya. Structures of the Cmr-Beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B Crispr-Cas. Mol.Cell V. 79 741 2020.
ISSN: ISSN 1097-2765
PubMed: 32730741
DOI: 10.1016/J.MOLCEL.2020.07.008
Page generated: Tue Dec 15 05:00:58 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy