Manganese in PDB 6s6v: Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs

The structure of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Manganese atom in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs (pdb code 6s6v). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs, PDB code: 6s6v:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:62.8 occ:0.75 OD1 A:ASP8 1.9 58.4 1.0 OD2 A:ASP48 2.0 61.4 1.0 MN A:MN502 2.5 80.0 1.0 NE2 A:HIS10 2.7 53.5 1.0 NE2 A:HIS224 2.7 67.4 1.0 CG A:ASP48 3.0 61.4 1.0 CG A:ASP8 3.1 58.4 1.0 CE1 A:HIS224 3.3 67.4 1.0 CE1 A:HIS10 3.4 53.5 1.0 CB A:ASP48 3.5 61.4 1.0 OD2 A:ASP8 3.7 58.4 1.0 CD2 A:HIS10 3.8 53.5 1.0 CD2 A:HIS224 3.9 67.4 1.0 ND1 A:HIS222 3.9 68.9 1.0 NE2 A:HIS184 4.0 70.6 1.0 OD1 A:ASP48 4.0 61.4 1.0 CB A:ASP8 4.2 58.4 1.0 CA A:HIS222 4.2 68.9 1.0 OD1 A:ASN83 4.3 62.0 1.0 CE1 A:HIS184 4.5 70.6 1.0 ND1 A:HIS224 4.5 67.4 1.0 O A:HIS222 4.6 68.9 1.0 CE1 A:HIS222 4.6 68.9 1.0 C A:HIS222 4.6 68.9 1.0 ND1 A:HIS10 4.7 53.5 1.0 CA A:ASP8 4.8 58.4 1.0 CG A:HIS224 4.8 67.4 1.0 N A:HIS222 4.8 68.9 1.0 CG A:HIS10 4.9 53.5 1.0 CG A:HIS222 4.9 68.9 1.0

Manganese binding site 2 out of 4 in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn502 b:80.0 occ:1.00 OD2 A:ASP48 1.8 61.4 1.0 ND1 A:HIS222 2.2 68.9 1.0 OD1 A:ASN83 2.3 62.0 1.0 CE1 A:HIS184 2.3 70.6 1.0 NE2 A:HIS184 2.4 70.6 1.0 MN A:MN501 2.5 62.8 0.8 CG A:ASP48 2.9 61.4 1.0 CE1 A:HIS222 3.0 68.9 1.0 CG A:HIS222 3.3 68.9 1.0 OD1 A:ASP48 3.4 61.4 1.0 CG A:ASN83 3.5 62.0 1.0 CA A:HIS222 3.6 68.9 1.0 ND1 A:HIS184 3.6 70.6 1.0 CB A:HIS222 3.7 68.9 1.0 OD1 A:ASP8 3.7 58.4 1.0 CD2 A:HIS184 3.8 70.6 1.0 NE2 A:HIS222 4.2 68.9 1.0 CB A:ASP48 4.2 61.4 1.0 N A:ASN83 4.3 62.0 1.0 CD2 A:HIS222 4.3 68.9 1.0 CG A:HIS184 4.4 70.6 1.0 ND2 A:ASN83 4.4 62.0 1.0 N A:HIS222 4.4 68.9 1.0 CB A:ASN83 4.4 62.0 1.0 O A:HIS222 4.5 68.9 1.0 C A:HIS222 4.6 68.9 1.0 CG A:ASP8 4.6 58.4 1.0 OD2 A:ASP8 4.7 58.4 1.0 NE2 A:HIS224 4.8 67.4 1.0 NE2 A:HIS10 4.8 53.5 1.0 CD2 A:HIS84 4.9 60.3 1.0 CA A:ASN83 4.9 62.0 1.0

Manganese binding site 3 out of 4 in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:63.3 occ:0.80 OD2 B:ASP48 1.9 62.5 1.0 OD1 B:ASP8 2.0 58.7 1.0 NE2 B:HIS224 2.2 68.3 1.0 MN B:MN502 2.4 79.8 1.0 NE2 B:HIS10 2.6 53.1 1.0 CG B:ASP48 3.0 62.5 1.0 CG B:ASP8 3.1 58.7 1.0 CE1 B:HIS224 3.2 68.3 1.0 CD2 B:HIS224 3.3 68.3 1.0 CE1 B:HIS10 3.4 53.1 1.0 O B:HIS222 3.5 69.4 1.0 CB B:ASP48 3.6 62.5 1.0 CD2 B:HIS10 3.7 53.1 1.0 CE1 B:HIS184 3.8 70.7 1.0 ND1 B:HIS222 3.8 69.4 1.0 OD2 B:ASP8 3.9 58.7 1.0 CB B:ASP8 4.0 58.7 1.0 OD1 B:ASP48 4.1 62.5 1.0 CE1 B:HIS222 4.3 69.4 1.0 ND1 B:HIS224 4.3 68.3 1.0 CG B:HIS224 4.4 68.3 1.0 NE2 B:HIS184 4.4 70.7 1.0 C B:HIS222 4.4 69.4 1.0 OD1 B:ASN83 4.6 63.4 1.0 ND1 B:HIS10 4.6 53.1 1.0 CA B:HIS222 4.7 69.4 1.0 CA B:ASP8 4.7 58.7 1.0 CG B:HIS10 4.8 53.1 1.0 CE1 B:HIS84 5.0 61.3 1.0 ND1 B:HIS84 5.0 61.3 1.0 ND1 B:HIS184 5.0 70.7 1.0

Manganese binding site 4 out of 4 in the Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Resting State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn502 b:79.8 occ:1.00 OD2 B:ASP48 1.8 62.5 1.0 NE2 B:HIS184 2.2 70.7 1.0 CE1 B:HIS184 2.2 70.7 1.0 MN B:MN501 2.4 63.3 0.8 OD1 B:ASN83 2.5 63.4 1.0 ND1 B:HIS222 2.5 69.4 1.0 CG B:ASP48 2.7 62.5 1.0 CE1 B:HIS222 2.9 69.4 1.0 OD1 B:ASP48 3.1 62.5 1.0 OD1 B:ASP8 3.4 58.7 1.0 ND1 B:HIS184 3.5 70.7 1.0 CD2 B:HIS184 3.5 70.7 1.0 CG B:ASN83 3.6 63.4 1.0 CG B:HIS222 3.7 69.4 1.0 CB B:ASP48 3.9 62.5 1.0 O B:HIS222 4.0 69.4 1.0 ND2 B:ASN83 4.1 63.4 1.0 CA B:HIS222 4.1 69.4 1.0 NE2 B:HIS222 4.2 69.4 1.0 CG B:HIS184 4.2 70.7 1.0 CB B:HIS222 4.4 69.4 1.0 ND1 B:HIS84 4.4 61.3 1.0 NE2 B:HIS224 4.4 68.3 1.0 N B:ASN83 4.4 63.4 1.0 CG B:ASP8 4.5 58.7 1.0 NE2 B:HIS10 4.5 53.1 1.0 C B:HIS222 4.5 69.4 1.0 CD2 B:HIS222 4.6 69.4 1.0 CE1 B:HIS84 4.7 61.3 1.0 OD2 B:ASP8 4.8 58.7 1.0 CB B:ASN83 4.8 63.4 1.0 O B:GLY221 4.9 69.4 1.0

L.Kashammer, J.H.Saathoff, K.Lammens, F.Gut, J.Bartho, A.Alt, B.Kessler, K.P.Hopfner. Mechanism of Dna End Sensing and Processing By the MRE11-RAD50 Complex. Mol.Cell V. 76 382 2019.
ISSN: ISSN 1097-2765
PubMed: 31492634
DOI: 10.1016/J.MOLCEL.2019.07.035