Manganese in PDB 6s24: Crystal Structure of the Tggalnac-T3 in Complex with Udp, Manganese and the Peptide 3

The structure of Crystal Structure of the Tggalnac-T3 in Complex with Udp, Manganese and the Peptide 3, PDB code: 6s24 was solved by M.De Las Rivas, E.J.P.Daniel, Y.Narimatsu, I.Companon, K.Kato, P.Hermosilla, A.Thureau, L.Ceballos-Laita, H.Coelho, P.Bernado, F.Marcelo, L.Hansen, A.Lostao, F.Corzana, H.Clausen, T.A.Gerken, R.Hurtado-Guerrero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.96 / 2.12
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.655, 104.661, 143.186, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 23.7

The binding sites of Manganese atom in the Crystal Structure of the Tggalnac-T3 in Complex with Udp, Manganese and the Peptide 3 (pdb code 6s24). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Tggalnac-T3 in Complex with Udp, Manganese and the Peptide 3, PDB code: 6s24:

Manganese binding site 1 out of 1 in the Crystal Structure of the Tggalnac-T3 in Complex with Udp, Manganese and the Peptide 3


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Tggalnac-T3 in Complex with Udp, Manganese and the Peptide 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn718 b:35.1 occ:1.00 O2A A:UDP717 2.1 43.0 1.0 O3B A:UDP717 2.1 50.4 1.0 NE2 A:HIS277 2.2 33.1 1.0 OD2 A:ASP275 2.2 39.1 1.0 NE2 A:HIS413 2.2 31.7 1.0 O A:HOH894 2.4 36.2 1.0 CE1 A:HIS413 3.0 31.4 1.0 CE1 A:HIS277 3.1 34.1 1.0 CD2 A:HIS277 3.2 31.1 1.0 CG A:ASP275 3.2 37.1 1.0 PA A:UDP717 3.4 44.4 1.0 PB A:UDP717 3.4 51.0 1.0 CD2 A:HIS413 3.4 32.8 1.0 C2 A:TAM701 3.6 70.5 1.0 CB A:ASP275 3.8 34.1 1.0 O3A A:UDP717 3.8 44.8 1.0 O2B A:UDP717 3.8 54.0 1.0 ND1 A:HIS413 4.2 31.8 1.0 C5' A:UDP717 4.3 39.1 1.0 ND1 A:HIS277 4.3 32.7 1.0 OD1 A:ASP275 4.3 40.9 1.0 O5' A:UDP717 4.3 45.9 1.0 CG A:HIS277 4.4 33.9 1.0 O A:VAL414 4.4 35.8 1.0 CG A:HIS413 4.4 33.0 1.0 O5 A:TAM701 4.4 59.5 1.0 O1A A:UDP717 4.5 49.7 1.0 C5 A:TAM701 4.6 68.8 1.0 C1 A:TAM701 4.6 63.4 1.0 NH2 A:ARG416 4.6 45.5 1.0 O1B A:UDP717 4.6 47.8 1.0 C A:TAM701 4.7 66.7 1.0 C3' A:UDP717 4.7 42.5 1.0 O A:HOH901 4.8 41.7 1.0

M.De Las Rivas, E.J.P.Daniel, Y.Narimatsu, I.Companon, K.Kato, P.Hermosilla, A.Thureau, L.Ceballos-Laita, H.Coelho, P.Bernado, F.Marcelo, L.Hansen, A.Lostao, F.Corzana, H.Clausen, T.A.Gerken, R.Hurtado-Guerrero. Molecular Basis For Fibroblast Growth Factor 23 O-Glycosylation By Galnac-T3. Nat.Chem.Biol. 2019.
ISSN: ESSN 1552-4469