Manganese in PDB 6s0d: H30 Mnsod-3 Mutant II

Enzymatic activity of H30 Mnsod-3 Mutant II

All present enzymatic activity of H30 Mnsod-3 Mutant II:
1.15.1.1;

Protein crystallography data

The structure of H30 Mnsod-3 Mutant II, PDB code: 6s0d was solved by R.Bonetta, C.H.Trinh, G.J.Hunter, T.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.32 / 1.52
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 82.480, 82.480, 135.220, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 21.9

Manganese Binding Sites:

The binding sites of Manganese atom in the H30 Mnsod-3 Mutant II (pdb code 6s0d). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the H30 Mnsod-3 Mutant II, PDB code: 6s0d:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 6s0d

Go back to Manganese Binding Sites List in 6s0d
Manganese binding site 1 out of 2 in the H30 Mnsod-3 Mutant II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of H30 Mnsod-3 Mutant II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:16.9
occ:1.00
OD2 A:ASP155 2.1 17.4 1.0
O A:HOH359 2.1 17.6 1.0
NE2 A:HIS74 2.2 17.5 1.0
NE2 A:HIS159 2.2 16.0 1.0
NE2 A:HIS26 2.2 17.2 1.0
ND2 A:ASN30 3.1 17.8 0.5
CG A:ASP155 3.1 16.4 1.0
CE1 A:HIS74 3.1 17.1 1.0
CD2 A:HIS159 3.2 17.7 1.0
CE1 A:HIS26 3.2 17.8 1.0
CE1 A:HIS159 3.2 16.6 1.0
CD2 A:HIS74 3.2 19.0 1.0
CD2 A:HIS26 3.2 18.9 1.0
OD1 A:ASP155 3.5 18.2 1.0
CG A:ASN30 4.2 24.2 0.5
ND1 A:HIS74 4.3 18.8 1.0
ND1 A:HIS26 4.3 18.5 1.0
ND1 A:HIS159 4.3 16.8 1.0
CG A:HIS159 4.3 16.3 1.0
CG A:HIS74 4.3 18.1 1.0
CG A:HIS26 4.4 18.6 1.0
CZ2 A:TRP122 4.4 18.1 1.0
CB A:ASP155 4.4 16.8 1.0
NE2 A:GLN142 4.5 17.8 1.0
CB A:TRP157 4.6 15.7 1.0
CG A:TRP157 4.7 14.8 1.0
OD1 A:ASN30 4.8 25.0 0.5
CD1 A:TRP157 5.0 15.6 1.0
CH2 A:TRP122 5.0 18.5 1.0

Manganese binding site 2 out of 2 in 6s0d

Go back to Manganese Binding Sites List in 6s0d
Manganese binding site 2 out of 2 in the H30 Mnsod-3 Mutant II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of H30 Mnsod-3 Mutant II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn201

b:28.3
occ:1.00
OD2 C:ASP155 2.0 30.8 1.0
NE2 C:HIS159 2.1 26.9 1.0
O C:HOH360 2.1 27.2 1.0
NE2 C:HIS74 2.2 27.9 1.0
NE2 C:HIS26 2.2 26.4 1.0
CE1 C:HIS159 3.0 26.6 1.0
CG C:ASP155 3.1 30.9 1.0
ND2 C:ASN30 3.1 26.2 0.4
CD2 C:HIS159 3.1 26.1 1.0
CD2 C:HIS74 3.1 27.6 1.0
CE1 C:HIS74 3.1 28.7 1.0
CE1 C:HIS26 3.2 29.6 1.0
CD2 C:HIS26 3.2 29.2 1.0
OD1 C:ASP155 3.5 26.4 1.0
ND1 C:HIS159 4.2 26.1 1.0
CG C:HIS159 4.2 26.9 1.0
CG C:ASN30 4.2 29.4 0.4
ND1 C:HIS74 4.2 26.4 1.0
CG C:HIS74 4.3 26.6 1.0
ND1 C:HIS26 4.3 33.5 1.0
CG C:HIS26 4.4 32.6 1.0
CZ2 C:TRP122 4.4 27.5 1.0
CB C:ASP155 4.4 26.6 1.0
NE2 C:GLN142 4.5 23.0 1.0
CB C:TRP157 4.7 24.1 1.0
CG C:TRP157 4.7 23.3 1.0
OD1 C:ASN30 4.8 30.1 0.4
CD1 C:TRP157 4.9 21.2 1.0
CH2 C:TRP122 4.9 27.7 1.0

Reference:

R.Bonetta, C.H.Trinh, G.J.Hunter, T.Hunter. H30 Mnsod-3 Mutant II To Be Published.
Page generated: Tue Dec 15 05:00:32 2020

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