Manganese in PDB 6rk6: Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity.

Enzymatic activity of Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity.

Protein crystallography data

Manganese Binding Sites:

Manganese binding site 1 out of 3 in 6rk6

Manganese Binding Sites List in 6rk6

Manganese binding site 1 out of 3 in the Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:99.6 occ:1.00 OD2 A:ASP163 2.4 91.8 1.0 OE2 A:GLU14 2.7 78.6 1.0 OD2 A:ASP12 2.9 71.4 1.0 OD1 A:ASP12 3.3 66.6 1.0 CG A:ASP12 3.5 69.5 1.0 CG A:ASP163 3.5 88.5 1.0 CD A:GLU14 3.6 72.2 1.0 CG A:GLU14 3.8 72.3 1.0 CB A:ASP163 4.1 81.2 1.0 CA A:ALA160 4.2 83.1 1.0 O A:GLN159 4.4 88.7 1.0 OD1 A:ASP163 4.5 86.9 1.0 CB A:ALA160 4.6 84.7 1.0 N A:ALA160 4.7 89.4 1.0 OE1 A:GLU14 4.7 72.2 1.0 C A:GLN159 4.8 90.9 1.0 CB A:ASP12 4.9 70.4 1.0 OE1 A:GLU27 5.0 84.1 1.0

Manganese binding site 2 out of 3 in 6rk6

Manganese Binding Sites List in 6rk6

Manganese binding site 2 out of 3 in the Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn201 b:0.2 occ:1.00 OD2 B:ASP163 2.4 99.7 1.0 OD2 B:ASP12 3.4 77.8 1.0 OE2 B:GLU14 3.4 84.1 1.0 CG B:ASP163 3.6 96.3 1.0 CA B:ALA160 3.7 85.9 1.0 O B:GLN159 3.8 89.6 1.0 OD1 B:ASP12 4.0 77.6 1.0 CG B:ASP12 4.0 76.6 1.0 N B:ALA160 4.1 90.2 1.0 C B:GLN159 4.1 92.3 1.0 CD B:GLU14 4.1 76.1 1.0 CG B:GLU14 4.2 72.0 1.0 CB B:ALA160 4.2 86.2 1.0 CB B:ASP163 4.3 89.4 1.0 OD1 B:ASP163 4.5 93.5 1.0 OE1 B:GLU27 4.6 81.9 1.0 O B:HIS158 4.7 0.0 1.0 C B:ALA160 4.9 82.4 1.0

Manganese binding site 3 out of 3 in 6rk6

Manganese Binding Sites List in 6rk6

Manganese binding site 3 out of 3 in the Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Characterization of An Intertidal Zone Metagenome Oligoribonuclease and the Role of the Intermolecular Disulfide Bond For Homodimer Formation and Nuclease Activity. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn201 b:95.4 occ:1.00 OE2 C:GLU14 2.4 73.6 1.0 OD2 C:ASP163 2.6 85.5 1.0 OD2 C:ASP12 3.0 73.4 1.0 OD1 C:ASP12 3.2 69.2 1.0 CD C:GLU14 3.4 68.7 1.0 CG C:ASP12 3.5 69.9 1.0 CG C:ASP163 3.6 86.5 1.0 CG C:GLU14 3.8 67.0 1.0 CB C:ASP163 4.2 82.2 1.0 OD1 C:ASP163 4.5 86.4 1.0 OE1 C:GLU14 4.5 71.0 1.0 CA C:ALA160 4.6 81.9 1.0 O C:GLN159 4.8 93.9 1.0 CB C:ASP12 4.9 65.9 1.0 CB C:ALA160 4.9 79.9 1.0

Reference: