Manganese in PDB 6rar: Pmar-LIG_PRES3-Mn

The structure of Pmar-LIG_PRES3-Mn, PDB code: 6rar was solved by H.K.S.Leiros, A.Williamson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.29 / 1.79
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.304, 103.315, 68.543, 90.00, 90.79, 90.00
R / Rfree (%)	23.3 / 26.4

The binding sites of Manganese atom in the Pmar-LIG_PRES3-Mn (pdb code 6rar). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Pmar-LIG_PRES3-Mn, PDB code: 6rar:

Manganese binding site 1 out of 1 in the Pmar-LIG_PRES3-Mn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Pmar-LIG_PRES3-Mn within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn101 b:46.2 occ:0.66 O I:HOH680 2.0 21.3 0.7 O3' C:DC31 2.2 35.3 1.0 O I:HOH611 2.3 27.3 1.0 O I:HOH613 2.5 29.0 1.0 OP3 D:DC32 2.5 38.7 1.0 O I:HOH678 3.1 43.6 1.0 HZ2 I:LYS167 3.3 26.9 1.0 HZ3 I:LYS167 3.5 26.9 1.0 HZ1 I:LYS167 3.5 26.9 1.0 C3' C:DC31 3.5 29.0 1.0 HA I:ASP169 3.6 29.3 1.0 NZ I:LYS167 3.6 22.0 1.0 OE1 I:GLU319 3.6 35.1 1.0 H I:GLY170 3.6 34.4 1.0 H4' C:DC31 3.7 39.5 1.0 H5'' C:DC31 3.8 33.8 1.0 OE2 I:GLU220 3.9 31.9 1.0 OD1 I:ASP169 3.9 18.7 1.0 P D:DC32 3.9 36.1 1.0 O I:GLY170 4.0 20.9 1.0 H3' C:DC31 4.0 35.4 1.0 C4' C:DC31 4.0 32.5 1.0 H1' D:AMP300 4.1 30.2 1.0 OE2 I:GLU319 4.1 33.3 1.0 HH22 I:ARG426 4.2 38.1 1.0 O I:LEU168 4.3 19.9 1.0 N I:GLY170 4.3 28.2 1.0 CD I:GLU319 4.3 35.2 1.0 H2'' C:DC31 4.3 39.5 1.0 O D:HOH414 4.3 25.5 1.0 OP2 D:DC32 4.4 34.2 1.0 O5' D:DC32 4.4 38.4 1.0 O4' D:AMP300 4.4 18.8 1.0 H4' D:AMP300 4.4 36.2 1.0 C5' C:DC31 4.4 27.7 1.0 CA I:ASP169 4.5 23.9 1.0 C2' C:DC31 4.5 32.5 1.0 HH21 I:ARG426 4.6 38.1 1.0 NH2 I:ARG426 4.6 31.3 1.0 C1' D:AMP300 4.8 24.7 1.0 C I:GLY170 4.8 21.8 1.0 HE1 I:PHE226 4.8 50.1 1.0 C I:ASP169 4.8 26.7 1.0 H8 D:AMP300 4.9 27.7 1.0 CG I:ASP169 4.9 32.6 1.0 OP1 D:DC32 4.9 28.7 1.0

A.Williamson, H.K.S.Leiros. Structure of A Novel Atp-Dependent Dna Ligase From Prochlorococcus Marinus To Be Published.