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Manganese in PDB 6r3o: Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid

Enzymatic activity of Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid

All present enzymatic activity of Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid:
4.1.1.102;

Protein crystallography data

The structure of Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid, PDB code: 6r3o was solved by S.S.Bailey, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.92 / 1.13
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.830, 64.100, 87.610, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 17

Other elements in 6r3o:

The structure of Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid also contains other interesting chemical elements:

Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid (pdb code 6r3o). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid, PDB code: 6r3o:

Manganese binding site 1 out of 1 in 6r3o

Go back to Manganese Binding Sites List in 6r3o
Manganese binding site 1 out of 1 in the Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspergillus Niger Ferric Acid Decarboxylase (Fdc) L439G Variant in Complex with Prfmn (Purified in the Radical Form) and Phenylpropiolic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:8.5
occ:1.00
 OE2 A:GLU233 2.1 8.6 1.0
OD1 A:ASN168 2.2 8.5 1.0
O2P A:4LU601 2.2 7.9 1.0
O A:HOH769 2.2 8.9 1.0
O A:HOH851 2.3 8.9 1.0
ND1 A:HIS191 2.3 9.0 1.0
CG A:ASN168 3.1 8.2 1.0
CD A:GLU233 3.2 8.3 1.0
CE1 A:HIS191 3.2 8.9 1.0
P A:4LU601 3.4 8.3 1.0
CG A:HIS191 3.4 8.4 1.0
ND2 A:ASN168 3.5 9.0 1.0
OE1 A:GLU233 3.5 9.0 1.0
O3P A:4LU601 3.6 8.8 1.0
K A:K603 3.7 9.0 1.0
CB A:HIS191 3.8 8.7 1.0
O1P A:4LU601 4.3 9.0 1.0
O A:ILE227 4.3 9.2 1.0
CZ2 A:TRP166 4.3 10.9 1.0
CG1 A:ILE227 4.4 10.8 1.0
NE2 A:HIS191 4.4 9.1 1.0
CB A:ASN168 4.5 9.1 1.0
CD2 A:HIS191 4.5 9.0 1.0
O A:VAL231 4.5 10.3 1.0
O5' A:4LU601 4.5 8.4 1.0
CG A:GLU233 4.5 9.2 1.0
O A:TRP169 4.6 8.4 1.0
NE1 A:TRP166 4.6 10.5 1.0
O A:PRO228 4.7 9.9 1.0
CE2 A:TRP166 4.9 10.2 1.0

Reference:

S.S.Bailey, K.A.P.Payne, A.Saaret, S.A.Marshall, I.Gostimskaya, I.Kosov, K.Fisher, S.Hay, D.Leys. Atomic Description of An Enzyme Reaction Dependent on Reversible 1,3-Dipolar Cycloaddition To Be Published.
Page generated: Sun Oct 6 06:59:06 2024

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