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Manganese in PDB 6qzm: H30 Mnsod-3 Mutant I

Enzymatic activity of H30 Mnsod-3 Mutant I

All present enzymatic activity of H30 Mnsod-3 Mutant I:
1.15.1.1;

Protein crystallography data

The structure of H30 Mnsod-3 Mutant I, PDB code: 6qzm was solved by R.Bonetta, C.H.Trinh, G.J.Hunter, T.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.74 / 1.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.490, 81.490, 138.660, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 20.6

Manganese Binding Sites:

The binding sites of Manganese atom in the H30 Mnsod-3 Mutant I (pdb code 6qzm). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the H30 Mnsod-3 Mutant I, PDB code: 6qzm:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 6qzm

Go back to Manganese Binding Sites List in 6qzm
Manganese binding site 1 out of 2 in the H30 Mnsod-3 Mutant I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of H30 Mnsod-3 Mutant I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:8.4
occ:1.00
O A:HOH349 2.0 7.7 1.0
OD2 A:ASP155 2.0 9.0 1.0
NE2 A:HIS26 2.2 7.9 1.0
NE2 A:HIS74 2.2 8.8 1.0
NE2 A:HIS159 2.2 8.4 1.0
CG A:ASP155 3.1 7.4 1.0
CE1 A:HIS74 3.1 8.2 1.0
CE1 A:HIS26 3.1 7.8 1.0
CD2 A:HIS159 3.2 8.0 1.0
CE1 A:HIS159 3.2 9.1 1.0
CD2 A:HIS26 3.2 9.4 1.0
CD2 A:HIS74 3.2 9.4 1.0
OD1 A:ASP155 3.5 8.6 1.0
CZ2 A:TRP122 4.2 8.5 1.0
ND1 A:HIS74 4.2 9.0 1.0
ND1 A:HIS26 4.3 8.7 1.0
ND1 A:HIS159 4.3 7.1 1.0
CG A:HIS26 4.3 7.9 1.0
CG A:HIS159 4.3 7.2 1.0
CB A:ASP155 4.3 8.8 1.0
CG A:HIS74 4.3 9.0 1.0
NE2 A:GLN142 4.4 8.5 1.0
CB A:TRP157 4.5 7.3 1.0
CG A:TRP157 4.6 7.0 1.0
CH2 A:TRP122 4.8 9.8 1.0
CD1 A:TRP157 4.8 8.4 1.0
CE2 A:TRP122 4.9 7.8 1.0

Manganese binding site 2 out of 2 in 6qzm

Go back to Manganese Binding Sites List in 6qzm
Manganese binding site 2 out of 2 in the H30 Mnsod-3 Mutant I


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of H30 Mnsod-3 Mutant I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn201

b:11.5
occ:1.00
O C:HOH344 2.0 7.4 1.0
OD2 C:ASP155 2.1 12.6 1.0
NE2 C:HIS26 2.2 10.4 1.0
NE2 C:HIS74 2.2 10.6 1.0
NE2 C:HIS159 2.2 12.9 1.0
CE1 C:HIS26 3.1 12.6 1.0
CG C:ASP155 3.1 12.3 1.0
CE1 C:HIS74 3.1 11.3 1.0
CE1 C:HIS159 3.2 10.6 1.0
CD2 C:HIS26 3.2 13.6 1.0
CD2 C:HIS74 3.2 11.1 1.0
CD2 C:HIS159 3.2 12.3 1.0
OD1 C:ASP155 3.5 11.2 1.0
CZ2 C:TRP122 4.2 10.4 1.0
ND1 C:HIS26 4.2 13.5 1.0
ND1 C:HIS74 4.2 11.5 1.0
CG C:HIS26 4.3 12.7 1.0
ND1 C:HIS159 4.3 12.5 1.0
CG C:HIS74 4.3 11.2 1.0
CB C:ASP155 4.3 11.2 1.0
NE2 C:GLN142 4.4 10.5 1.0
CG C:HIS159 4.4 10.5 1.0
CB C:TRP157 4.5 10.2 1.0
CG C:TRP157 4.6 9.2 1.0
CH2 C:TRP122 4.8 11.2 1.0
CD1 C:TRP157 4.8 9.9 1.0
CE2 C:TRP122 4.9 10.6 1.0

Reference:

R.Bonetta, C.H.Trinh, G.J.Hunter, T.Hunter. H30 Mnsod-3 Mutant II To Be Published.
Page generated: Sun Oct 6 06:57:37 2024

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