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Manganese in PDB 6quf: Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass

Enzymatic activity of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass

All present enzymatic activity of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass:
5.3.1.5;

Protein crystallography data

The structure of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass, PDB code: 6quf was solved by B.D.Belviso, R.Caliandro, R.Caliandro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.93 / 1.19
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.522, 98.167, 101.851, 90.00, 90.00, 90.00
R / Rfree (%) 10.7 / 12.9

Manganese Binding Sites:

The binding sites of Manganese atom in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass (pdb code 6quf). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass, PDB code: 6quf:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 6quf

Go back to Manganese Binding Sites List in 6quf
Manganese binding site 1 out of 2 in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:9.6
occ:0.47
 OE1 A:GLU217 2.0 12.9 1.0
HE2 A:HIS220 2.0 12.4 0.0
O A:HOH798 2.2 15.2 0.9
OD2 A:ASP255 2.2 21.1 1.0
OD1 A:ASP255 2.3 18.7 1.0
OD1 A:ASP257 2.3 15.0 1.0
CG A:ASP255 2.5 16.8 1.0
NE2 A:HIS220 2.7 12.4 1.0
CD A:GLU217 3.0 8.9 1.0
HD2 A:HIS220 3.1 8.8 1.0
CD2 A:HIS220 3.2 8.8 1.0
HD21 A:ASN247 3.3 7.4 0.0
CG A:ASP257 3.3 12.6 1.0
OE2 A:GLU217 3.5 17.2 1.0
OD2 A:ASP257 3.5 20.0 1.0
O A:HOH778 3.6 25.8 1.0
CE1 A:HIS220 3.8 15.3 1.0
HD22 A:ASN247 3.8 7.4 0.0
ND2 A:ASN247 3.9 7.4 1.0
HO1 A:GOL404 4.0 15.4 0.0
HE3 A:LYS183 4.0 9.0 1.0
CB A:ASP255 4.0 12.4 1.0
HE1 A:HIS220 4.2 11.6 1.0
O A:HOH605 4.2 10.9 1.0
HZ1 A:LYS183 4.3 13.5 1.0
HG2 A:GLU217 4.3 6.8 1.0
CG A:GLU217 4.3 6.8 1.0
HB2 A:ASP255 4.3 10.4 1.0
O1 A:GOL404 4.4 15.4 0.9
CG A:HIS220 4.4 7.7 1.0
HB3 A:ASP255 4.5 12.0 1.0
HA A:ASP257 4.6 7.6 1.0
OD2 A:ASP287 4.6 12.0 1.0
HZ2 A:LYS183 4.6 12.4 1.0
CB A:ASP257 4.6 9.5 1.0
O A:HOH536 4.7 34.4 0.8
H A:ASP257 4.7 6.3 1.0
ND1 A:HIS220 4.7 9.9 1.0
NZ A:LYS183 4.8 14.2 1.0
CE A:LYS183 4.8 8.7 1.0
MN A:MN402 4.9 7.9 0.5
HA3 A:GLY219 4.9 5.4 1.0
HG3 A:GLU217 4.9 6.9 1.0
HA A:ASP255 4.9 8.6 1.0
CA A:ASP255 5.0 8.1 1.0
HZ3 A:LYS289 5.0 13.2 0.5
CA A:ASP257 5.0 7.3 1.0

Manganese binding site 2 out of 2 in 6quf

Go back to Manganese Binding Sites List in 6quf
Manganese binding site 2 out of 2 in the Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Protein Crystallization By Ionic Liquid Hydrogel Support: Reference Crystal of Glucose Isomerase Grown on Standard Silanized Glass within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn402

b:7.9
occ:0.54
 OE2 A:GLU217 2.0 17.2 1.0
OD2 A:ASP287 2.0 12.0 1.0
OE2 A:GLU181 2.1 13.2 1.0
O2 A:GOL404 2.2 12.8 0.9
OD2 A:ASP245 2.2 11.3 1.0
O1 A:GOL404 2.2 15.4 0.9
HO2 A:GOL404 2.8 12.7 0.0
HO1 A:GOL404 2.8 15.4 0.0
CD A:GLU181 3.0 11.9 1.0
C1 A:GOL404 3.1 16.6 0.9
CG A:ASP287 3.1 7.9 1.0
C2 A:GOL404 3.1 13.8 0.9
CD A:GLU217 3.2 8.9 1.0
OE1 A:GLU181 3.3 10.6 1.0
H12 A:GOL404 3.3 16.4 0.9
CG A:ASP245 3.4 8.9 1.0
HB3 A:ASP287 3.4 6.8 1.0
HB2 A:GLU217 3.5 6.0 1.0
H2 A:GOL404 3.5 12.5 0.9
HB2 A:ASP287 3.5 6.8 1.0
HE1 A:HIS220 3.6 11.6 1.0
CB A:ASP287 3.6 6.6 1.0
HB3 A:ASP245 3.7 7.2 1.0
O A:HOH798 3.9 15.2 0.9
H11 A:GOL404 4.0 15.6 0.9
CB A:ASP245 4.0 7.2 1.0
HB2 A:ASP245 4.0 7.2 1.0
O A:HOH698 4.0 13.7 0.9
CE1 A:HIS220 4.0 15.3 1.0
OE1 A:GLU217 4.1 12.9 1.0
CG A:GLU217 4.1 6.8 1.0
CB A:GLU217 4.2 5.8 1.0
OD1 A:ASP287 4.2 8.2 1.0
HG3 A:GLU217 4.3 6.9 1.0
OD1 A:ASP245 4.4 9.8 1.0
CG A:GLU181 4.4 8.4 1.0
C3 A:GOL404 4.4 10.1 0.9
HE2 A:HIS220 4.5 12.4 0.0
HB3 A:GLU217 4.5 6.0 1.0
H31 A:GOL404 4.5 10.4 0.9
HD21 A:ASN215 4.5 9.6 0.0
NE2 A:HIS220 4.5 12.4 1.0
HG2 A:GLU181 4.6 8.7 1.0
HZ2 A:TRP16 4.6 7.3 1.0
HG3 A:GLU181 4.6 8.7 1.0
HD22 A:ASN215 4.7 9.6 0.0
H32 A:GOL404 4.8 10.2 0.9
ND1 A:HIS220 4.8 9.9 1.0
MN A:MN401 4.9 9.6 0.5
ND2 A:ASN215 4.9 9.6 1.0

Reference:

B.D.Belviso, R.Caliandro, S.M.Salehi, G.Di Profio, R.Caliandro. Protein Crystallization in Ionic-Liquid Hydrogel Composite Membranes Crystals 2019.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST9050253
Page generated: Sun Oct 6 06:08:14 2024

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