Manganese in PDB 6qrz: Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction

Enzymatic activity of Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction

All present enzymatic activity of Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction:
1.17.4.1;

Other elements in 6qrz:

The structure of Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction also contains other interesting chemical elements:

Iron

(Fe)

1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction (pdb code 6qrz). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction, PDB code: 6qrz:

Manganese binding site 1 out of 1 in 6qrz

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Manganese Binding Sites List in 6qrz

Manganese binding site 1 out of 1 in the Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of R2-Like Ligand-Binding Oxidase From Sulfolobus Acidocaldarius Solved By 3D Micro-Crystal Electron Diffraction within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn401 b:51.4 occ:1.00	OE1	A:GLU79	2.6	41.7	1.0
	OE2	A:GLU214	2.7	55.0	1.0
	OE1	A:GLU112	2.7	41.0	1.0
	ND1	A:HIS115	2.8	31.6	1.0
	OE2	A:GLU79	3.1	47.5	1.0
	CD	A:GLU79	3.2	46.0	1.0
	OE2	A:GLU112	3.3	40.8	1.0
	CD	A:GLU112	3.3	40.5	1.0
	FE	A:FE402	3.4	38.0	1.0
	CE1	A:HIS115	3.4	34.1	1.0
	CD	A:GLU214	3.7	53.0	1.0
	CG	A:HIS115	3.9	35.4	1.0
	CG	A:GLU214	4.0	44.8	1.0
	OH	A:TYR187	4.0	48.4	1.0
	ND1	A:HIS217	4.3	41.4	1.0
	CB	A:HIS115	4.3	35.4	1.0
	CG2	A:ILE210	4.4	46.0	1.0
	CE1	A:HIS217	4.5	38.9	1.0
	NE2	A:HIS115	4.6	36.8	1.0
	CG	A:GLU79	4.7	41.4	1.0
	CG	A:GLU112	4.8	38.6	1.0
	OE1	A:GLU214	4.8	43.0	1.0
	CD2	A:HIS115	4.9	32.5	1.0
	CA	A:GLU112	4.9	35.0	1.0

Reference:

H.Xu, H.Lebrette, M.T.B.Clabbers, J.Zhao, J.J.Griese, X.Zou, M.Hogbom. Solving A New R2LOX Protein Structure By Microcrystal Electron Diffraction. Sci Adv V. 5 X4621 2019.
ISSN: ESSN 2375-2548
PubMed: 31457106
DOI: 10.1126/SCIADV.AAX4621

Page generated: Sun Oct 6 06:06:16 2024

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