Atomistry » Manganese » PDB 6q9p-6qv8 » 6qk0
Atomistry »
  Manganese »
    PDB 6q9p-6qv8 »
      6qk0 »

Manganese in PDB 6qk0: R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor

Enzymatic activity of R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor

All present enzymatic activity of R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor:
1.17.4.1;

Protein crystallography data

The structure of R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qk0 was solved by J.J.Griese, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.60 / 2.09
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 160.808, 55.963, 98.059, 90.00, 126.23, 90.00
R / Rfree (%) 20.9 / 26.3

Other elements in 6qk0:

The structure of R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor (pdb code 6qk0). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qk0:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 6qk0

Go back to Manganese Binding Sites List in 6qk0
Manganese binding site 1 out of 2 in the R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:38.6
occ:1.00
O2 A:PLM403 2.0 67.6 1.0
OD1 A:ASP69 2.2 48.8 1.0
OE1 A:GLU102 2.2 38.6 1.0
ND1 A:HIS105 2.2 36.8 1.0
OE2 A:GLU202 2.4 51.5 1.0
C1 A:PLM403 2.6 62.0 1.0
O A:HOH503 3.0 50.8 1.0
O1 A:PLM403 3.0 49.4 1.0
CD A:GLU102 3.2 39.2 1.0
CE1 A:HIS105 3.2 41.6 1.0
CG A:HIS105 3.3 35.4 1.0
HE1 A:HIS105 3.3 50.0 1.0
HB2 A:HIS105 3.4 41.4 1.0
CG A:ASP69 3.4 48.7 1.0
HB3 A:HIS105 3.4 41.4 1.0
OE2 A:GLU102 3.5 39.7 1.0
FE A:FE2402 3.5 45.1 1.0
CB A:HIS105 3.6 34.5 1.0
CD A:GLU202 3.7 58.2 1.0
HA A:GLU102 3.7 35.0 1.0
C2 A:PLM403 4.0 55.6 1.0
OD2 A:ASP69 4.0 47.5 1.0
HG21 A:VAL72 4.0 55.8 1.0
HA A:ASP69 4.1 52.4 1.0
H22 A:PLM403 4.1 66.7 1.0
H31 A:PLM403 4.3 57.7 1.0
NE2 A:HIS105 4.3 36.0 1.0
CD2 A:HIS105 4.4 32.1 1.0
HH A:TYR175 4.4 48.8 1.0
HG A:LEU198 4.4 45.8 1.0
HE1 A:HIS205 4.4 47.6 1.0
OE1 A:GLU202 4.5 50.4 1.0
HG2 A:GLU202 4.5 65.1 1.0
CB A:ASP69 4.5 44.8 1.0
OH A:TYR175 4.5 40.6 1.0
CG A:GLU102 4.5 35.2 1.0
H32 A:PLM403 4.5 57.7 1.0
C3 A:PLM403 4.6 48.1 1.0
CA A:GLU102 4.6 29.2 1.0
HG23 A:VAL72 4.6 55.8 1.0
CG A:GLU202 4.6 54.3 1.0
HB3 A:GLU102 4.6 34.6 1.0
HB3 A:ASP69 4.6 53.7 1.0
CG2 A:VAL72 4.7 46.5 1.0
HD23 A:LEU198 4.8 47.1 1.0
HG3 A:GLU202 4.8 65.1 1.0
H21 A:PLM403 4.8 66.7 1.0
CB A:GLU102 4.8 28.8 1.0
CA A:ASP69 4.8 43.7 1.0
HG22 A:VAL72 4.9 55.8 1.0
HG2 A:GLU167 5.0 53.4 1.0

Manganese binding site 2 out of 2 in 6qk0

Go back to Manganese Binding Sites List in 6qk0
Manganese binding site 2 out of 2 in the R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn401

b:62.0
occ:0.93
OE1 B:GLU102 2.2 62.7 1.0
ND1 B:HIS105 2.2 49.6 1.0
OE2 B:GLU202 2.2 64.2 1.0
OE2 B:GLU102 2.3 58.4 1.0
CD B:GLU102 2.6 47.0 1.0
FE B:FE2402 3.1 44.7 0.6
CE1 B:HIS105 3.1 46.4 1.0
CD B:GLU202 3.1 57.9 1.0
HE1 B:HIS105 3.2 55.6 1.0
CG B:HIS105 3.3 48.2 1.0
OE1 B:GLU202 3.3 59.7 1.0
HB3 B:HIS105 3.5 45.2 1.0
HB2 B:HIS105 3.5 45.2 1.0
CB B:HIS105 3.7 37.7 1.0
HA B:GLU102 3.9 40.4 1.0
O1 B:PLM403 4.1 64.5 1.0
HH B:TYR175 4.1 63.2 1.0
CG B:GLU102 4.2 51.1 1.0
HE1 B:HIS205 4.2 46.9 1.0
NE2 B:HIS105 4.2 41.7 1.0
HD1 B:HIS205 4.3 44.3 1.0
HG B:LEU198 4.3 58.8 1.0
CD2 B:HIS105 4.3 42.5 1.0
OH B:TYR175 4.4 52.7 1.0
HG2 B:GLU102 4.5 61.4 1.0
CG B:GLU202 4.5 49.7 1.0
HG3 B:GLU102 4.6 61.4 1.0
HG2 B:GLU167 4.6 48.4 1.0
OE2 B:GLU167 4.7 43.4 1.0
HG2 B:GLU202 4.7 59.7 1.0
CA B:GLU102 4.7 33.6 1.0
CE1 B:HIS205 4.8 39.1 1.0
ND1 B:HIS205 4.9 37.0 1.0
CB B:GLU102 4.9 35.1 1.0
HB3 B:GLU102 4.9 42.2 1.0
HG3 B:GLU202 4.9 59.7 1.0
HE2 B:HIS105 5.0 50.0 1.0

Reference:

J.J.Griese, M.Hogbom. R2-Like Ligand-Binding Oxidase E69D Mutant with Anaerobically Reconstituted Mn/Fe Cofactor To Be Published.
Page generated: Sun Oct 6 06:00:44 2024

Last articles

Cl in 4AHN
Cl in 4AH4
Cl in 4AGR
Cl in 4AGG
Cl in 4ACF
Cl in 4AGA
Cl in 4AF8
Cl in 4AC2
Cl in 4ADG
Cl in 4ADN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy