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Manganese in PDB 6q9f: Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER)

Enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER)

All present enzymatic activity of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER):
1.14.11.16; 3.4.21.6;

Protein crystallography data

The structure of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER), PDB code: 6q9f was solved by R.Chowdhury, I.Pfeffer, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.16 / 1.63
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.808, 91.541, 122.900, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER) (pdb code 6q9f). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER), PDB code: 6q9f:

Manganese binding site 1 out of 1 in 6q9f

Go back to Manganese Binding Sites List in 6q9f
Manganese binding site 1 out of 1 in the Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn901

b:32.1
occ:1.00
 O1 A:OGA902 2.1 30.9 0.7
O A:HOH1065 2.1 31.6 1.0
O1 A:OGA902 2.1 36.6 0.3
O A:HOH1198 2.2 31.4 1.0
NE2 A:HIS725 2.2 26.3 1.0
O A:HOH1259 2.2 40.5 1.0
O2' A:OGA902 2.3 34.4 0.3
O2' A:OGA902 2.3 34.1 0.7
C1 A:OGA902 2.8 37.9 0.3
C2 A:OGA902 2.8 33.0 0.3
C1 A:OGA902 2.9 37.1 0.7
C2 A:OGA902 3.0 36.0 0.7
CD2 A:HIS725 3.1 30.5 1.0
HD2 A:HIS725 3.2 36.6 1.0
CE1 A:HIS725 3.2 30.1 1.0
HE1 A:HIS725 3.5 36.2 1.0
HB3 B:ASP103 3.6 31.1 1.0
HH11 A:ARG688 3.8 34.1 1.0
O B:HOH202 3.9 44.4 1.0
HB2 A:ASP721 3.9 33.3 1.0
O2 A:OGA902 4.0 32.7 0.3
O2 A:OGA902 4.1 31.7 0.7
N1 A:OGA902 4.2 39.1 0.3
HH12 A:ARG688 4.2 34.1 1.0
CG A:HIS725 4.2 31.1 1.0
ND1 A:HIS725 4.3 29.3 1.0
O B:ASP103 4.3 27.1 1.0
NH1 A:ARG688 4.3 28.4 1.0
N1 A:OGA902 4.3 34.3 0.7
O A:HOH1083 4.3 33.2 1.0
HH2 A:TRP625 4.4 29.6 1.0
OD2 A:ASP721 4.4 31.2 1.0
HD13 A:LEU619 4.5 38.0 1.0
O A:HOH1208 4.5 29.6 1.0
CB B:ASP103 4.5 25.9 1.0
HE2 A:PHE719 4.6 33.4 1.0
H4C1 A:OGA902 4.7 41.9 0.3
HZ A:PHE719 4.7 35.2 1.0
H1 A:OGA902 4.8 47.0 0.3
CB A:ASP721 4.8 27.7 1.0
HA B:ASP103 4.8 32.0 1.0
H1 A:OGA902 4.9 41.2 0.7
HB3 A:ALA679 4.9 56.9 1.0
H4C1 A:OGA902 4.9 48.4 0.7
CG B:ASP103 4.9 34.5 1.0
C4 A:OGA902 5.0 34.9 0.3
HG11 A:VAL676 5.0 29.7 1.0

Reference:

I.Pfeffer, R.Chowdhury, C.J.Schofield. Aspartyl/Asparaginyl Beta-Hydroxylase (Asph) H679A in Complex with Mn, Nog and Factor X Peptide Fragment (39MER-4SER) To Be Published.
Page generated: Tue Dec 15 04:59:04 2020

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