Atomistry » Manganese » PDB 6oe2-6q9f » 6pup
Atomistry »
  Manganese »
    PDB 6oe2-6q9f »
      6pup »

Manganese in PDB 6pup: 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn

Protein crystallography data

The structure of 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn, PDB code: 6pup was solved by L.Sjekloca, A.R.Ferre D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.83 / 1.89
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 62.268, 58.632, 62.520, 90.00, 118.71, 90.00
R / Rfree (%) 17 / 21.8

Manganese Binding Sites:

The binding sites of Manganese atom in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn (pdb code 6pup). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn, PDB code: 6pup:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 6pup

Go back to Manganese Binding Sites List in 6pup
Manganese binding site 1 out of 2 in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:33.7
occ:1.00
O A:HOH401 1.0 4.6 1.0
MN A:MN302 1.7 32.6 1.0
OD2 A:ASP130 2.2 46.8 1.0
OD2 A:ASP128 2.3 37.6 1.0
O A:HOH440 2.5 37.5 1.0
O A:HOH405 2.8 33.4 1.0
OD1 A:ASP130 2.8 45.8 1.0
O A:HOH445 2.8 30.2 1.0
CG A:ASP130 2.8 37.1 1.0
OD1 A:ASP128 2.8 37.2 1.0
CG A:ASP128 2.9 30.3 1.0
O A:HOH439 3.8 41.2 1.0
OE2 A:GLU131 4.0 60.3 1.0
CB A:ASP130 4.3 34.0 1.0
CB A:ASP128 4.4 28.2 1.0
CG A:GLU131 4.8 45.7 1.0
CD A:GLU131 4.8 51.7 1.0

Manganese binding site 2 out of 2 in 6pup

Go back to Manganese Binding Sites List in 6pup
Manganese binding site 2 out of 2 in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn302

b:32.6
occ:1.00
O A:HOH401 0.8 4.6 1.0
MN A:MN301 1.7 33.7 1.0
O A:HOH440 2.1 37.5 1.0
OD1 A:ASP130 2.2 45.8 1.0
O A:HOH405 2.2 33.4 1.0
O A:HOH439 2.5 41.2 1.0
OE2 A:GLU131 2.5 60.3 1.0
OD2 A:ASP128 2.6 37.6 1.0
O A:HOH445 2.7 30.2 1.0
CG A:ASP130 2.9 37.1 1.0
OD2 A:ASP130 3.1 46.8 1.0
CD A:GLU131 3.4 51.7 1.0
CG A:ASP128 3.7 30.3 1.0
CG A:GLU131 3.9 45.7 1.0
OD1 A:ASP128 4.1 37.2 1.0
CB A:ASP130 4.4 34.0 1.0
OE1 A:GLU131 4.4 48.3 1.0
N A:GLU131 4.5 31.2 1.0
CB A:ASP128 4.9 28.2 1.0

Reference:

L.Sjekloca, A.R.Ferre D'amare. Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn To Be Published.
Page generated: Sun Oct 6 05:52:26 2024

Last articles

W in 8QLN
W in 8RJA
V in 8WTN
Te in 8QLN
Re in 9GHX
Rb in 8Z5C
Ni in 9C0T
Ni in 9C0S
Ni in 9GP1
Ni in 9FYO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy