Manganese in PDB 6pup: 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn

The structure of 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn, PDB code: 6pup was solved by L.Sjekloca, A.R.Ferre D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.83 / 1.89
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	62.268, 58.632, 62.520, 90.00, 118.71, 90.00
R / Rfree (%)	17 / 21.8

The binding sites of Manganese atom in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn (pdb code 6pup). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn, PDB code: 6pup:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:33.7 occ:1.00 O A:HOH401 1.0 4.6 1.0 MN A:MN302 1.7 32.6 1.0 OD2 A:ASP130 2.2 46.8 1.0 OD2 A:ASP128 2.3 37.6 1.0 O A:HOH440 2.5 37.5 1.0 O A:HOH405 2.8 33.4 1.0 OD1 A:ASP130 2.8 45.8 1.0 O A:HOH445 2.8 30.2 1.0 CG A:ASP130 2.8 37.1 1.0 OD1 A:ASP128 2.8 37.2 1.0 CG A:ASP128 2.9 30.3 1.0 O A:HOH439 3.8 41.2 1.0 OE2 A:GLU131 4.0 60.3 1.0 CB A:ASP130 4.3 34.0 1.0 CB A:ASP128 4.4 28.2 1.0 CG A:GLU131 4.8 45.7 1.0 CD A:GLU131 4.8 51.7 1.0

Manganese binding site 2 out of 2 in the 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of 1.9 A Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn302 b:32.6 occ:1.00 O A:HOH401 0.8 4.6 1.0 MN A:MN301 1.7 33.7 1.0 O A:HOH440 2.1 37.5 1.0 OD1 A:ASP130 2.2 45.8 1.0 O A:HOH405 2.2 33.4 1.0 O A:HOH439 2.5 41.2 1.0 OE2 A:GLU131 2.5 60.3 1.0 OD2 A:ASP128 2.6 37.6 1.0 O A:HOH445 2.7 30.2 1.0 CG A:ASP130 2.9 37.1 1.0 OD2 A:ASP130 3.1 46.8 1.0 CD A:GLU131 3.4 51.7 1.0 CG A:ASP128 3.7 30.3 1.0 CG A:GLU131 3.9 45.7 1.0 OD1 A:ASP128 4.1 37.2 1.0 CB A:ASP130 4.4 34.0 1.0 OE1 A:GLU131 4.4 48.3 1.0 N A:GLU131 4.5 31.2 1.0 CB A:ASP128 4.9 28.2 1.0

L.Sjekloca, A.R.Ferre D'amare. Crystal Structure of Flavodoxin-Like Domain of Schizosaccharomyces Japonicus Putative Trnaphe 4-Demethylwyosine Synthase TYW1 in Complex with Fmn To Be Published.