Manganese in PDB 6pro: Mnsod From Geobacillus Stearothermophilus
Enzymatic activity of Mnsod From Geobacillus Stearothermophilus
All present enzymatic activity of Mnsod From Geobacillus Stearothermophilus:
1.15.1.1;
Protein crystallography data
The structure of Mnsod From Geobacillus Stearothermophilus, PDB code: 6pro
was solved by
J.J.Adams,
C.J.Morton,
M.W.Parker,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.05 /
2.26
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
72.200,
111.100,
51.100,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.4 /
19.6
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Mnsod From Geobacillus Stearothermophilus
(pdb code 6pro). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the
Mnsod From Geobacillus Stearothermophilus, PDB code: 6pro:
Jump to Manganese binding site number:
1;
2;
Manganese binding site 1 out
of 2 in 6pro
Go back to
Manganese Binding Sites List in 6pro
Manganese binding site 1 out
of 2 in the Mnsod From Geobacillus Stearothermophilus
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Mnsod From Geobacillus Stearothermophilus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn301
b:12.8
occ:0.83
|
OD2
|
A:ASP163
|
1.9
|
13.3
|
1.0
|
NE2
|
A:HIS26
|
2.0
|
18.2
|
1.0
|
NE2
|
A:HIS81
|
2.1
|
20.8
|
1.0
|
O
|
A:HOH412
|
2.1
|
8.2
|
1.0
|
NE2
|
A:HIS167
|
2.1
|
18.3
|
1.0
|
CE1
|
A:HIS26
|
2.9
|
18.4
|
1.0
|
CE1
|
A:HIS81
|
3.0
|
22.3
|
1.0
|
CE1
|
A:HIS167
|
3.0
|
16.9
|
1.0
|
CG
|
A:ASP163
|
3.1
|
14.6
|
1.0
|
CD2
|
A:HIS26
|
3.1
|
18.5
|
1.0
|
HE1
|
A:HIS26
|
3.1
|
22.2
|
1.0
|
HE1
|
A:HIS81
|
3.1
|
26.9
|
1.0
|
CD2
|
A:HIS81
|
3.1
|
21.1
|
1.0
|
HE1
|
A:HIS167
|
3.2
|
20.4
|
1.0
|
CD2
|
A:HIS167
|
3.2
|
18.9
|
1.0
|
HD2
|
A:HIS26
|
3.3
|
22.3
|
1.0
|
HD2
|
A:HIS81
|
3.4
|
25.4
|
1.0
|
HD2
|
A:HIS167
|
3.4
|
22.8
|
1.0
|
OD1
|
A:ASP163
|
3.6
|
12.3
|
1.0
|
HE22
|
A:GLN148
|
3.7
|
27.3
|
1.0
|
HB2
|
A:TRP165
|
3.7
|
16.9
|
1.0
|
HZ2
|
A:TRP130
|
3.8
|
22.9
|
1.0
|
HB2
|
A:ALA168
|
4.1
|
15.1
|
1.0
|
ND1
|
A:HIS26
|
4.1
|
18.1
|
1.0
|
ND1
|
A:HIS81
|
4.1
|
22.0
|
1.0
|
CG
|
A:HIS26
|
4.2
|
18.4
|
1.0
|
ND1
|
A:HIS167
|
4.2
|
17.5
|
1.0
|
CG
|
A:HIS81
|
4.2
|
20.1
|
1.0
|
CB
|
A:ASP163
|
4.3
|
13.4
|
1.0
|
CG
|
A:HIS167
|
4.3
|
18.6
|
1.0
|
HB2
|
A:ASP163
|
4.3
|
16.1
|
1.0
|
CZ2
|
A:TRP130
|
4.4
|
19.0
|
1.0
|
HE2
|
A:TYR34
|
4.4
|
26.3
|
1.0
|
HB3
|
A:ASP163
|
4.4
|
16.1
|
1.0
|
NE2
|
A:GLN148
|
4.5
|
22.6
|
1.0
|
HB3
|
A:HIS30
|
4.5
|
21.9
|
1.0
|
CB
|
A:TRP165
|
4.6
|
14.0
|
1.0
|
CG
|
A:TRP165
|
4.8
|
18.6
|
1.0
|
HE21
|
A:GLN148
|
4.8
|
27.3
|
1.0
|
HB3
|
A:TRP165
|
4.8
|
16.9
|
1.0
|
HH
|
A:TYR34
|
4.8
|
32.3
|
1.0
|
HH2
|
A:TRP130
|
4.8
|
16.7
|
1.0
|
HD1
|
A:HIS26
|
4.9
|
21.9
|
1.0
|
HD1
|
A:HIS81
|
4.9
|
26.5
|
1.0
|
HD1
|
A:HIS167
|
4.9
|
21.2
|
1.0
|
CH2
|
A:TRP130
|
5.0
|
13.8
|
1.0
|
|
Manganese binding site 2 out
of 2 in 6pro
Go back to
Manganese Binding Sites List in 6pro
Manganese binding site 2 out
of 2 in the Mnsod From Geobacillus Stearothermophilus
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Mnsod From Geobacillus Stearothermophilus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn301
b:9.8
occ:0.87
|
NE2
|
B:HIS26
|
2.0
|
22.3
|
1.0
|
OD2
|
B:ASP163
|
2.0
|
18.4
|
1.0
|
NE2
|
B:HIS167
|
2.2
|
19.6
|
1.0
|
NE2
|
B:HIS81
|
2.2
|
18.0
|
1.0
|
O
|
B:HOH426
|
2.3
|
14.6
|
1.0
|
CE1
|
B:HIS26
|
2.9
|
22.1
|
1.0
|
HE1
|
B:HIS26
|
3.0
|
26.7
|
1.0
|
CD2
|
B:HIS26
|
3.1
|
21.2
|
1.0
|
CD2
|
B:HIS81
|
3.1
|
18.6
|
1.0
|
CE1
|
B:HIS167
|
3.1
|
17.7
|
1.0
|
CG
|
B:ASP163
|
3.2
|
18.2
|
1.0
|
CE1
|
B:HIS81
|
3.2
|
18.5
|
1.0
|
CD2
|
B:HIS167
|
3.2
|
19.0
|
1.0
|
HE1
|
B:HIS167
|
3.3
|
21.3
|
1.0
|
HD2
|
B:HIS81
|
3.3
|
22.4
|
1.0
|
HD2
|
B:HIS26
|
3.3
|
25.6
|
1.0
|
HE1
|
B:HIS81
|
3.4
|
22.3
|
1.0
|
HD2
|
B:HIS167
|
3.4
|
22.9
|
1.0
|
OD1
|
B:ASP163
|
3.6
|
14.7
|
1.0
|
HE22
|
B:GLN148
|
3.8
|
24.9
|
1.0
|
HB2
|
B:TRP165
|
3.8
|
21.6
|
1.0
|
HZ2
|
B:TRP130
|
3.9
|
27.7
|
1.0
|
ND1
|
B:HIS26
|
4.0
|
20.5
|
1.0
|
HB2
|
B:ALA168
|
4.1
|
21.4
|
1.0
|
CG
|
B:HIS26
|
4.2
|
20.9
|
1.0
|
ND1
|
B:HIS81
|
4.3
|
18.9
|
1.0
|
ND1
|
B:HIS167
|
4.3
|
16.6
|
1.0
|
CG
|
B:HIS81
|
4.3
|
17.7
|
1.0
|
HE2
|
B:TYR34
|
4.3
|
30.5
|
1.0
|
CG
|
B:HIS167
|
4.3
|
16.9
|
1.0
|
CB
|
B:ASP163
|
4.4
|
17.8
|
1.0
|
CZ2
|
B:TRP130
|
4.5
|
22.9
|
1.0
|
HB2
|
B:ASP163
|
4.5
|
21.5
|
1.0
|
HB3
|
B:HIS30
|
4.5
|
19.8
|
1.0
|
NE2
|
B:GLN148
|
4.5
|
20.7
|
1.0
|
HB3
|
B:ASP163
|
4.6
|
21.5
|
1.0
|
CB
|
B:TRP165
|
4.7
|
17.9
|
1.0
|
HD1
|
B:HIS26
|
4.8
|
24.8
|
1.0
|
HE21
|
B:GLN148
|
4.8
|
24.9
|
1.0
|
CG
|
B:TRP165
|
4.8
|
17.3
|
1.0
|
HH2
|
B:TRP130
|
4.9
|
28.3
|
1.0
|
HB3
|
B:TRP165
|
4.9
|
21.6
|
1.0
|
|
Reference:
J.J.Adams,
C.J.Morton,
M.W.Parker.
The Crystal Structure of the Manganese Superoxide Dismutase From Geobacillus Stearothermophilus: Parker and Blake (1988) Revisited Aust.J.Chem. V. 73 145 2020.
ISSN: ISSN 0004-9425
DOI: 10.1071/CH19346
Page generated: Sun Oct 6 05:52:16 2024
|