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Manganese in PDB 6o7e: Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System

Other elements in 6o7e:

The structure of Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System (pdb code 6o7e). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System, PDB code: 6o7e:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 6o7e

Go back to Manganese Binding Sites List in 6o7e
Manganese binding site 1 out of 3 in the Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn804

b:31.4
occ:1.00
O2A A:ANP802 2.0 27.4 1.0
OD1 A:ASP588 2.2 24.2 1.0
OD2 A:ASP588 2.4 24.2 1.0
CG A:ASP588 2.6 24.2 1.0
MN A:MN805 3.3 31.4 1.0
OD2 A:ASP521 3.4 21.6 1.0
PA A:ANP802 3.6 27.4 1.0
O3' A:ANP803 4.0 33.3 1.0
CB A:ASP521 4.0 21.6 1.0
CB A:ASP588 4.1 24.2 1.0
CG A:ASP521 4.2 21.6 1.0
O3A A:ANP802 4.2 27.4 1.0
CB A:ASP589 4.4 26.1 1.0
O5' A:ANP802 4.4 27.4 1.0
O1A A:ANP802 4.4 27.4 1.0
CG A:ASP589 4.5 26.1 1.0
O2' A:ANP803 4.5 33.3 1.0
OD2 A:ASP589 4.6 26.1 1.0
N A:ASP589 4.7 26.1 1.0
C5' A:ANP802 4.7 27.4 1.0
C A:ASP588 4.8 24.2 1.0
CA A:ASP588 4.8 24.2 1.0
OD1 A:ASP589 4.9 26.1 1.0
N A:ASP588 5.0 24.2 1.0

Manganese binding site 2 out of 3 in 6o7e

Go back to Manganese Binding Sites List in 6o7e
Manganese binding site 2 out of 3 in the Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn805

b:31.4
occ:1.00
O2G A:ANP802 1.9 27.4 1.0
O A:VAL522 2.3 20.4 1.0
O3A A:ANP802 2.3 27.4 1.0
OD2 A:ASP588 2.5 24.2 1.0
O2A A:ANP802 2.7 27.4 1.0
PA A:ANP802 3.1 27.4 1.0
OD2 A:ASP521 3.2 21.6 1.0
PG A:ANP802 3.2 27.4 1.0
MN A:MN804 3.3 31.4 1.0
CG A:ASP588 3.5 24.2 1.0
O1G A:ANP802 3.6 27.4 1.0
PB A:ANP802 3.6 27.4 1.0
C A:VAL522 3.6 20.4 1.0
CG A:ASP521 3.7 21.6 1.0
CB A:ASP521 3.9 21.6 1.0
O2B A:ANP802 3.9 27.4 1.0
N3B A:ANP802 4.1 27.4 1.0
O1A A:ANP802 4.1 27.4 1.0
OD1 A:ASP588 4.3 24.2 1.0
O5' A:ANP802 4.3 27.4 1.0
N A:VAL522 4.3 20.4 1.0
CB A:ASP588 4.4 24.2 1.0
O3G A:ANP802 4.4 27.4 1.0
OD1 A:ASP521 4.5 21.6 1.0
N A:ASP523 4.5 26.2 1.0
CA A:VAL522 4.5 20.4 1.0
CA A:ASP523 4.5 26.2 1.0
C5' A:ANP802 4.5 27.4 1.0
C A:ASP521 4.6 21.6 1.0
O1B A:ANP802 4.8 27.4 1.0
CB A:LEU525 4.9 27.7 1.0
CA A:ASP521 4.9 21.6 1.0
CB A:VAL522 5.0 20.4 1.0

Manganese binding site 3 out of 3 in 6o7e

Go back to Manganese Binding Sites List in 6o7e
Manganese binding site 3 out of 3 in the Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Cryo-Em Structure of Csm-Crrna-Target Rna Ternary Complex in Complex with Amppnp in Type III-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn806

b:64.3
occ:1.00
OD1 A:ASP239 1.9 24.0 1.0
OD2 A:ASP239 2.0 24.0 1.0
CG A:ASP239 2.2 24.0 1.0
O2B A:ANP803 3.1 33.3 1.0
O A:PHE240 3.1 18.2 1.0
O1A A:ANP803 3.2 33.3 1.0
O2G A:ANP803 3.7 33.3 1.0
CB A:ASP239 3.7 24.0 1.0
C A:PHE240 4.2 18.2 1.0
O A:GLY294 4.3 23.2 1.0
O5' A:ANP803 4.3 33.3 1.0
PA A:ANP803 4.3 33.3 1.0
N A:PHE240 4.3 18.2 1.0
O2' A:ANP802 4.5 27.4 1.0
CA A:ASP239 4.6 24.0 1.0
PB A:ANP803 4.6 33.3 1.0
C A:ASP239 4.7 24.0 1.0
O3' A:ANP803 4.7 33.3 1.0
C3' A:ANP803 4.8 33.3 1.0
CD2 A:HIS295 4.8 25.1 1.0
CB A:HIS295 4.9 25.1 1.0
CA A:PHE240 4.9 18.2 1.0
O A:GLY293 4.9 24.2 1.0
O3A A:ANP803 4.9 33.3 1.0

Reference:

N.Jia, R.Jones, G.Sukenick, D.J.Patel. Second Messenger CA4FORMATION Within the Composite CSM1 Palm Pocket of Type III-A Crispr-Cas Csm Complex and Its Release Path. Mol.Cell V. 75 933 2019.
ISSN: ISSN 1097-2765
PubMed: 31326272
DOI: 10.1016/J.MOLCEL.2019.06.013
Page generated: Tue Dec 15 04:58:08 2020

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