Atomistry » Manganese » PDB 6m30-6obu » 6o74
Atomistry »
  Manganese »
    PDB 6m30-6obu »
      6o74 »

Manganese in PDB 6o74: Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp

Protein crystallography data

The structure of Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp, PDB code: 6o74 was solved by N.Jia, D.J.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.41 / 2.71
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 156.432, 156.432, 185.473, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 25.9

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp (pdb code 6o74). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp, PDB code: 6o74:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 6o74

Go back to Manganese Binding Sites List in 6o74
Manganese binding site 1 out of 3 in the Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn803

b:70.5
occ:1.00
O2B A:ANP801 2.1 75.7 1.0
OD2 A:ASP521 2.1 66.7 1.0
O A:VAL522 2.2 57.5 1.0
O1G A:ANP801 2.3 65.4 1.0
OD2 A:ASP588 2.4 65.4 1.0
O1A A:ANP801 2.4 71.7 1.0
PB A:ANP801 3.0 67.8 1.0
O3A A:ANP801 3.0 64.3 1.0
CG A:ASP521 3.1 60.8 1.0
PA A:ANP801 3.2 68.0 1.0
C A:VAL522 3.4 58.4 1.0
PG A:ANP801 3.4 72.7 1.0
OD1 A:ASP521 3.5 62.4 1.0
CG A:ASP588 3.5 67.7 1.0
N3B A:ANP801 3.6 70.9 1.0
MN A:MN804 3.8 72.1 1.0
O5' A:ANP801 3.8 72.2 1.0
OD1 A:ASP588 3.9 70.8 1.0
N A:VAL522 3.9 60.1 1.0
NZ A:LYS648 4.1 70.3 1.0
O2G A:ANP801 4.1 67.8 1.0
CA A:VAL522 4.1 60.0 1.0
O1B A:ANP801 4.4 73.2 1.0
CB A:ASP521 4.4 59.6 1.0
N A:ASP523 4.5 59.4 1.0
C A:ASP521 4.5 63.8 1.0
CB A:LEU525 4.6 74.2 1.0
CB A:VAL522 4.6 61.9 1.0
O2A A:ANP801 4.6 70.6 1.0
O3G A:ANP801 4.7 75.8 1.0
N A:LEU525 4.7 74.1 1.0
N A:ARG524 4.7 79.5 1.0
CB A:ASP588 4.8 72.2 1.0
CE A:LYS648 4.8 67.5 1.0
CA A:ASP523 4.8 63.3 1.0
O A:ASP588 4.9 67.1 1.0
CA A:ASP521 4.9 60.9 1.0
C5' A:ANP801 4.9 70.6 1.0
C A:ASP523 5.0 70.0 1.0

Manganese binding site 2 out of 3 in 6o74

Go back to Manganese Binding Sites List in 6o74
Manganese binding site 2 out of 3 in the Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn804

b:72.1
occ:1.00
OD1 A:ASP521 2.1 62.4 1.0
O1A A:ANP801 2.2 71.7 1.0
OD2 A:ASP589 2.4 73.6 1.0
OD1 A:ASP588 2.6 70.8 1.0
CG A:ASP521 3.2 60.8 1.0
PA A:ANP801 3.5 68.0 1.0
CG A:ASP588 3.5 67.7 1.0
CG A:ASP589 3.5 74.0 1.0
OD2 A:ASP588 3.6 65.4 1.0
OD2 A:ASP521 3.7 66.7 1.0
MN A:MN803 3.8 70.5 1.0
CB A:ASP589 3.9 69.9 1.0
O2A A:ANP801 4.0 70.6 1.0
O5' A:ANP801 4.1 72.2 1.0
O3' A:ANP802 4.2 66.9 1.0
CB A:ASP521 4.5 59.6 1.0
O A:ASP588 4.5 67.1 1.0
C A:ASP588 4.6 65.8 1.0
OD1 A:ASP589 4.6 79.2 1.0
C3' A:ANP802 4.7 71.0 1.0
O3A A:ANP801 4.7 64.3 1.0
N A:ASP589 4.8 62.2 1.0
CB A:ASP588 4.8 72.2 1.0
O2' A:ANP802 4.9 76.1 1.0
CA A:ASP589 5.0 65.7 1.0
O1G A:ANP801 5.0 65.4 1.0

Manganese binding site 3 out of 3 in 6o74

Go back to Manganese Binding Sites List in 6o74
Manganese binding site 3 out of 3 in the Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of CSM1-CSM4 Cassette in Complex with Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn805

b:0.6
occ:1.00
O1A A:ANP802 2.0 0.2 1.0
O1B A:ANP802 2.5 0.7 1.0
O A:PHE240 2.9 70.2 1.0
N3B A:ANP802 3.0 0.0 1.0
PB A:ANP802 3.0 0.4 1.0
PA A:ANP802 3.1 97.2 1.0
OD2 A:ASP239 3.2 1.0 1.0
O3A A:ANP802 3.3 0.5 1.0
O1G A:ANP802 3.3 0.7 1.0
C5' A:ANP802 3.6 78.4 1.0
PG A:ANP802 3.6 0.3 1.0
O5' A:ANP802 3.8 97.1 1.0
CG A:ASP239 4.0 92.3 1.0
NZ A:LYS367 4.0 81.4 1.0
OD1 A:ASP239 4.0 87.4 1.0
C A:PHE240 4.1 70.2 1.0
O3G A:ANP802 4.2 0.6 1.0
CD1 A:ILE243 4.2 70.1 1.0
O2A A:ANP802 4.4 93.3 1.0
O2B A:ANP802 4.5 0.0 1.0
CA A:SER241 4.5 73.0 1.0
N A:SER241 4.8 72.4 1.0
CG1 A:ILE243 4.8 68.3 1.0

Reference:

N.Jia, R.Jones, G.Sukenick, D.J.Patel. Second Messenger CA4FORMATION Within the Composite CSM1 Palm Pocket of Type III-A Crispr-Cas Csm Complex and Its Release Path. Mol.Cell V. 75 933 2019.
ISSN: ISSN 1097-2765
PubMed: 31326272
DOI: 10.1016/J.MOLCEL.2019.06.013
Page generated: Tue Dec 15 04:58:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy