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Manganese in PDB 6myt: Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket

Enzymatic activity of Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket

All present enzymatic activity of Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket:
1.3.5.1;

Protein crystallography data

The structure of Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket, PDB code: 6myt was solved by E.A.Berry, L.-S.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.19 / 2.27
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.992, 83.817, 290.344, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 26

Other elements in 6myt:

The structure of Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket also contains other interesting chemical elements:

Potassium (K) 1 atom
Iron (Fe) 10 atoms
Chlorine (Cl) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket (pdb code 6myt). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket, PDB code: 6myt:

Manganese binding site 1 out of 1 in 6myt

Go back to Manganese Binding Sites List in 6myt
Manganese binding site 1 out of 1 in the Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Avian Mitochondrial Complex II with Atpenin A5 Bound, Sidechain in Pocket within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1004

b:82.9
occ:0.65
 MN A:UNL1004 0.0 82.9 0.7
O2 A:UNL1004 1.8 84.2 1.0
NE2 A:HIS505 2.1 84.3 1.0
N1 A:UNL1004 2.1 80.6 0.6
CE1 A:HIS505 2.9 85.8 1.0
N2 A:UNL1004 3.0 79.8 0.6
CD2 A:HIS505 3.2 82.3 1.0
N3 A:UNL1004 3.9 78.8 0.6
ND1 A:HIS505 4.1 85.2 1.0
OD1 A:ASP502 4.2 78.5 1.0
CG A:HIS505 4.3 82.7 1.0

Reference:

L.-S.Huang, E.A.Berry. Crystallographic Studies of the Binding of Ligands to the Ubiquinone Site of Mitochondrial Respiratory Complex II To Be Published.
Page generated: Sun Oct 6 05:31:27 2024

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