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Manganese in PDB 6myq: Avian Mitochondrial Complex II with Ferulenol Bound

Enzymatic activity of Avian Mitochondrial Complex II with Ferulenol Bound

All present enzymatic activity of Avian Mitochondrial Complex II with Ferulenol Bound:
1.3.5.1;

Protein crystallography data

The structure of Avian Mitochondrial Complex II with Ferulenol Bound, PDB code: 6myq was solved by E.A.Berry, L.-S.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.34 / 1.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.910, 84.553, 290.523, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 23.9

Other elements in 6myq:

The structure of Avian Mitochondrial Complex II with Ferulenol Bound also contains other interesting chemical elements:

Potassium (K) 2 atoms
Iron (Fe) 10 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Avian Mitochondrial Complex II with Ferulenol Bound (pdb code 6myq). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Avian Mitochondrial Complex II with Ferulenol Bound, PDB code: 6myq:

Manganese binding site 1 out of 1 in 6myq

Go back to Manganese Binding Sites List in 6myq
Manganese binding site 1 out of 1 in the Avian Mitochondrial Complex II with Ferulenol Bound


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Avian Mitochondrial Complex II with Ferulenol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1004

b:67.7
occ:0.62
MN A:UNL1004 0.0 67.7 0.6
O1 A:UNL1004 1.9 65.8 1.0
O2 A:UNL1004 2.2 74.7 1.0
NE2 A:HIS505 2.2 65.2 1.0
N1 A:UNL1004 2.2 67.0 0.8
N2 A:UNL1004 2.9 68.1 0.8
CE1 A:HIS505 3.0 70.4 1.0
CD2 A:HIS505 3.3 67.3 1.0
N3 A:UNL1004 3.9 66.0 0.8
ND1 A:HIS505 4.2 64.7 1.0
CG A:HIS505 4.4 68.6 1.0
OD1 A:ASP502 4.4 61.9 1.0
O A:UNL1023 4.8 70.2 1.0

Reference:

L.-S.Huang, E.A.Berry. Crystallographic Studies of the Binding of Ligands to the Ubiquinone Site of Mitochondrial Respiratory Complex II To Be Published.
Page generated: Sun Oct 6 05:31:25 2024

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