Manganese in PDB 6mw8: Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Manganese

All present enzymatic activity of Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Manganese:
2.4.1.87;

The structure of Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Manganese, PDB code: 6mw8 was solved by H.W.Kim, Z.A.Wood, C.M.West, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.59 / 1.76
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.055, 84.055, 76.076, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 20.9

The binding sites of Manganese atom in the Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Manganese (pdb code 6mw8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Manganese, PDB code: 6mw8:

Manganese binding site 1 out of 1 in the Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Udp-Galactose:Glucoside-SKP1 Alpha-D-Galactosyltransferase with Bound Udp and Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:28.0 occ:1.00 O3B A:UDP302 2.1 30.2 1.0 NE2 A:HIS231 2.2 26.0 1.0 OD1 A:ASP119 2.2 25.6 1.0 O1A A:UDP302 2.2 32.3 1.0 OD2 A:ASP117 2.3 24.0 1.0 OD2 A:ASP119 2.4 26.4 1.0 CG A:ASP119 2.6 25.8 1.0 CE1 A:HIS231 3.1 25.6 1.0 CD2 A:HIS231 3.2 23.7 1.0 CG A:ASP117 3.2 29.8 1.0 PB A:UDP302 3.3 37.5 1.0 PA A:UDP302 3.4 34.2 1.0 CB A:ASP117 3.6 21.9 1.0 O3A A:UDP302 3.6 36.0 1.0 O3' A:UDP302 3.9 28.8 1.0 O2B A:UDP302 4.0 38.8 1.0 O A:HOH448 4.1 29.2 1.0 CB A:ASP119 4.1 23.9 1.0 O A:HOH435 4.2 48.4 1.0 ND1 A:HIS231 4.3 24.9 1.0 C5' A:UDP302 4.3 33.1 1.0 CG A:HIS231 4.3 22.6 1.0 OD1 A:ASP117 4.4 25.4 1.0 O5' A:UDP302 4.4 33.7 1.0 NZ A:LYS237 4.5 30.2 1.0 O2A A:UDP302 4.5 32.9 1.0 O1B A:UDP302 4.6 37.8 1.0 CA A:SER233 4.6 31.4 1.0 C3' A:UDP302 4.7 28.6 1.0 CB A:SER233 4.8 37.4 1.0 N A:ASP119 4.9 25.5 1.0 CA A:ASP119 4.9 25.5 1.0 C4' A:UDP302 5.0 33.8 1.0 N A:SER233 5.0 27.8 1.0

M.Mandalasi, H.W.Kim, K.Rahman, N.Daniel, M.O.Sheikh, H.Van Der Wel, D.Thieker, T.H.Ichikawa, J.N.Glushka, L.Wells, Z.A.Wood, C.M.West. A Glycogenin Homolog Controls Toxoplasma Gondii Growth Via Glycosylation of An E3 Ubiquitin Ligase To Be Published.