Manganese in PDB 6l7w: Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion.

The structure of Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion., PDB code: 6l7w was solved by N.Kuwabara, K.Ho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.89 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.445, 73.208, 63.747, 90.00, 114.06, 90.00
R / Rfree (%)	23.9 / 29.4

The binding sites of Manganese atom in the Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion. (pdb code 6l7w). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion., PDB code: 6l7w:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:59.1 occ:1.00 OE2 A:GLU44 2.1 84.7 1.0 OE2 A:GLU212 2.1 77.9 1.0 OE1 A:GLU42 2.2 76.9 1.0 CD A:GLU44 2.7 77.3 1.0 OE1 A:GLU44 3.0 78.4 1.0 O A:HOH407 3.1 37.6 1.0 CD A:GLU212 3.3 70.7 1.0 CD A:GLU42 3.3 72.6 1.0 O A:HOH417 3.4 49.2 1.0 OE2 A:GLU210 3.7 40.6 1.0 CG A:GLU44 3.8 69.7 1.0 CG A:GLU212 3.8 61.5 1.0 OE2 A:GLU42 4.1 75.5 1.0 CG A:GLU42 4.3 69.2 1.0 OE1 A:GLU212 4.3 74.4 1.0 CD A:GLU210 4.4 39.0 1.0 NZ A:LYS138 4.5 40.8 1.0 OE1 A:GLU162 4.8 65.8 1.0 OD2 A:ASP195 4.8 41.5 1.0 CG A:GLU210 4.9 37.5 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of CET1 From Trypanosoma Cruzi in Complex with Manganese Ion. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn301 b:47.9 occ:1.00 OE1 B:GLU212 2.1 71.0 1.0 OE2 B:GLU44 2.2 71.4 1.0 O B:HOH422 3.0 35.0 1.0 OE2 B:GLU42 3.1 59.4 1.0 CD B:GLU212 3.3 66.5 1.0 CD B:GLU44 3.3 68.2 1.0 CD B:GLU42 3.5 58.5 1.0 OE1 B:GLU42 3.6 60.9 1.0 OE2 B:GLU212 3.9 68.4 1.0 OE2 B:GLU210 3.9 51.8 1.0 OE1 B:GLU44 3.9 70.1 1.0 CD B:GLU210 4.3 50.0 1.0 CG B:GLU44 4.4 63.4 1.0 NZ B:LYS138 4.4 54.8 1.0 CG B:GLU212 4.4 61.4 1.0 CG B:GLU42 4.6 53.2 1.0 CB B:GLU44 4.8 58.2 1.0 OD2 B:ASP195 4.8 41.1 1.0 CG B:GLU210 4.8 46.2 1.0 OE1 B:GLU210 4.9 51.1 1.0

Y.Takagi, N.Kuwabara, T.T.Dang, K.Furukawa, C.K.Ho. Crystal Structures of the Rna Triphosphatase From Trypanosoma Cruzi Provide Insights Into How It Recognizes the 5' End of the Rna Substrate. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 32381506
DOI: 10.1074/JBC.RA119.011811