Manganese in PDB 6kxu: BON1
Protein crystallography data
The structure of BON1, PDB code: 6kxu
was solved by
Q.C.Wang,
M.Q.Jiang,
M.N.Isupov,
L.F.Sun,
Y.K.Wu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
82.31 /
2.83
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
122.406,
118.705,
222.317,
90.00,
90.03,
90.00
|
|
R / Rfree (%)
|
20.4 /
25
|
Other elements in 6kxu:
The structure of BON1 also contains other interesting chemical elements:
Manganese Binding Sites:
The binding sites of Manganese atom in the BON1
(pdb code 6kxu). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 10 binding sites of Manganese where determined in the
BON1, PDB code: 6kxu:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 1 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn605
b:0.4
occ:0.60
|
OG1
|
A:THR320
|
2.0
|
67.7
|
1.0
|
|
OG
|
A:SER322
|
2.0
|
98.0
|
1.0
|
|
OD2
|
A:ASP318
|
2.1
|
0.6
|
1.0
|
|
OD1
|
A:ASP448
|
2.1
|
0.5
|
1.0
|
|
OG1
|
A:THR416
|
2.1
|
98.8
|
1.0
|
|
CG
|
A:ASP318
|
3.1
|
86.7
|
1.0
|
|
CB
|
A:THR320
|
3.2
|
56.3
|
1.0
|
|
CG
|
A:ASP448
|
3.3
|
88.8
|
1.0
|
|
CB
|
A:SER322
|
3.4
|
80.0
|
1.0
|
|
OD1
|
A:ASP318
|
3.5
|
0.2
|
1.0
|
|
CB
|
A:THR416
|
3.5
|
77.2
|
1.0
|
|
CG2
|
A:THR320
|
3.5
|
45.8
|
1.0
|
|
N
|
A:GLY449
|
3.9
|
93.5
|
1.0
|
|
CG2
|
A:THR416
|
4.0
|
95.2
|
1.0
|
|
OD2
|
A:ASP448
|
4.1
|
0.2
|
1.0
|
|
OG1
|
A:THR447
|
4.2
|
61.0
|
1.0
|
|
N
|
A:ASP448
|
4.4
|
67.3
|
1.0
|
|
CB
|
A:ASP448
|
4.4
|
82.2
|
1.0
|
|
CA
|
A:GLY449
|
4.4
|
77.8
|
1.0
|
|
CA
|
A:THR320
|
4.4
|
49.1
|
1.0
|
|
CB
|
A:ASP318
|
4.5
|
70.0
|
1.0
|
|
C
|
A:ASP448
|
4.6
|
94.0
|
1.0
|
|
CA
|
A:SER322
|
4.7
|
61.6
|
1.0
|
|
CA
|
A:ASP448
|
4.7
|
85.6
|
1.0
|
|
CA
|
A:THR416
|
4.7
|
69.8
|
1.0
|
|
N
|
A:THR320
|
4.8
|
62.4
|
1.0
|
|
C
|
A:THR320
|
4.9
|
53.2
|
1.0
|
|
N
|
A:SER322
|
4.9
|
56.6
|
1.0
|
|
O
|
A:THR320
|
4.9
|
73.4
|
1.0
|
|
ND2
|
A:ASN323
|
5.0
|
57.3
|
1.0
|
|
C
|
A:GLY449
|
5.0
|
87.7
|
1.0
|
|
Manganese binding site 2 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 2 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn602
b:0.7
occ:0.60
|
OG1
|
B:THR320
|
2.0
|
91.1
|
1.0
|
|
OG
|
B:SER322
|
2.0
|
0.4
|
1.0
|
|
OD2
|
B:ASP318
|
2.0
|
0.3
|
1.0
|
|
OD1
|
B:ASP448
|
2.0
|
0.4
|
1.0
|
|
OG1
|
B:THR416
|
2.1
|
0.2
|
1.0
|
|
CG
|
B:ASP318
|
3.1
|
93.9
|
1.0
|
|
CB
|
B:THR320
|
3.2
|
87.8
|
1.0
|
|
CG
|
B:ASP448
|
3.3
|
86.8
|
1.0
|
|
CB
|
B:SER322
|
3.4
|
85.3
|
1.0
|
|
OD1
|
B:ASP318
|
3.4
|
0.3
|
1.0
|
|
CB
|
B:THR416
|
3.5
|
0.8
|
1.0
|
|
CG2
|
B:THR320
|
3.5
|
66.1
|
1.0
|
|
N
|
B:GLY449
|
3.9
|
0.5
|
1.0
|
|
CG2
|
B:THR416
|
4.0
|
0.6
|
1.0
|
|
OD2
|
B:ASP448
|
4.0
|
0.4
|
1.0
|
|
OG1
|
B:THR447
|
4.2
|
0.1
|
1.0
|
|
N
|
B:ASP448
|
4.4
|
86.7
|
1.0
|
|
CB
|
B:ASP448
|
4.4
|
78.5
|
1.0
|
|
CA
|
B:GLY449
|
4.4
|
96.8
|
1.0
|
|
CA
|
B:THR320
|
4.4
|
85.8
|
1.0
|
|
CB
|
B:ASP318
|
4.5
|
87.1
|
1.0
|
|
C
|
B:ASP448
|
4.6
|
0.6
|
1.0
|
|
CA
|
B:SER322
|
4.7
|
74.0
|
1.0
|
|
CA
|
B:ASP448
|
4.7
|
95.9
|
1.0
|
|
CA
|
B:THR416
|
4.7
|
0.4
|
1.0
|
|
N
|
B:THR320
|
4.7
|
79.9
|
1.0
|
|
C
|
B:THR320
|
4.8
|
86.9
|
1.0
|
|
O
|
B:THR320
|
4.9
|
0.7
|
1.0
|
|
N
|
B:SER322
|
4.9
|
75.7
|
1.0
|
|
ND2
|
B:ASN323
|
4.9
|
83.4
|
1.0
|
|
Manganese binding site 3 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 3 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn606
b:0.1
occ:0.60
|
OG1
|
C:THR320
|
2.0
|
86.0
|
1.0
|
|
OG
|
C:SER322
|
2.0
|
0.9
|
1.0
|
|
OD2
|
C:ASP318
|
2.0
|
0.3
|
1.0
|
|
OD1
|
C:ASP448
|
2.1
|
0.4
|
1.0
|
|
OG1
|
C:THR416
|
2.1
|
94.1
|
1.0
|
|
CG
|
C:ASP318
|
3.1
|
0.3
|
1.0
|
|
CB
|
C:THR320
|
3.2
|
78.8
|
1.0
|
|
CG
|
C:ASP448
|
3.3
|
92.6
|
1.0
|
|
CB
|
C:SER322
|
3.4
|
72.6
|
1.0
|
|
OD1
|
C:ASP318
|
3.5
|
0.9
|
1.0
|
|
CB
|
C:THR416
|
3.5
|
73.1
|
1.0
|
|
CG2
|
C:THR320
|
3.6
|
74.0
|
1.0
|
|
N
|
C:GLY449
|
3.9
|
88.5
|
1.0
|
|
CG2
|
C:THR416
|
4.0
|
88.5
|
1.0
|
|
OD2
|
C:ASP448
|
4.1
|
96.1
|
1.0
|
|
OG1
|
C:THR447
|
4.1
|
85.3
|
1.0
|
|
N
|
C:ASP448
|
4.3
|
75.1
|
1.0
|
|
CA
|
C:GLY449
|
4.4
|
77.9
|
1.0
|
|
CB
|
C:ASP448
|
4.4
|
82.1
|
1.0
|
|
CA
|
C:THR320
|
4.4
|
73.7
|
1.0
|
|
CB
|
C:ASP318
|
4.5
|
83.9
|
1.0
|
|
C
|
C:ASP448
|
4.6
|
85.5
|
1.0
|
|
CA
|
C:SER322
|
4.7
|
68.4
|
1.0
|
|
CA
|
C:ASP448
|
4.7
|
78.0
|
1.0
|
|
CA
|
C:THR416
|
4.7
|
86.0
|
1.0
|
|
N
|
C:THR320
|
4.8
|
78.5
|
1.0
|
|
C
|
C:THR320
|
4.9
|
69.8
|
1.0
|
|
N
|
C:SER322
|
4.9
|
65.7
|
1.0
|
|
O
|
C:THR320
|
4.9
|
60.2
|
1.0
|
|
C
|
C:GLY449
|
4.9
|
0.9
|
1.0
|
|
Manganese binding site 4 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 4 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn603
b:0.1
occ:0.60
|
OG1
|
D:THR320
|
1.9
|
0.2
|
1.0
|
|
OD1
|
D:ASP448
|
1.9
|
0.2
|
1.0
|
|
OD2
|
D:ASP318
|
2.0
|
0.0
|
1.0
|
|
OG
|
D:SER322
|
2.0
|
86.8
|
1.0
|
|
OD1
|
D:ASP318
|
2.3
|
0.9
|
1.0
|
|
CG
|
D:ASP318
|
2.4
|
91.1
|
1.0
|
|
CG
|
D:ASP448
|
2.7
|
87.9
|
1.0
|
|
CB
|
D:THR320
|
3.2
|
84.4
|
1.0
|
|
ND2
|
D:ASN323
|
3.3
|
63.7
|
1.0
|
|
OD2
|
D:ASP448
|
3.3
|
90.7
|
1.0
|
|
CB
|
D:SER322
|
3.3
|
60.6
|
1.0
|
|
O
|
D:THR320
|
3.6
|
60.9
|
1.0
|
|
CB
|
D:ASP448
|
3.6
|
77.9
|
1.0
|
|
OG1
|
D:THR416
|
3.7
|
55.6
|
1.0
|
|
CG
|
D:ASN323
|
3.8
|
67.6
|
1.0
|
|
CA
|
D:THR320
|
3.8
|
72.3
|
1.0
|
|
CB
|
D:ASP318
|
3.9
|
79.7
|
1.0
|
|
CG2
|
D:THR320
|
3.9
|
80.7
|
1.0
|
|
N
|
D:THR320
|
3.9
|
62.8
|
1.0
|
|
C
|
D:THR320
|
4.0
|
70.6
|
1.0
|
|
OD1
|
D:ASN323
|
4.1
|
58.6
|
1.0
|
|
N
|
D:ASP448
|
4.1
|
62.9
|
1.0
|
|
CA
|
D:SER322
|
4.2
|
68.5
|
1.0
|
|
N
|
D:ASN323
|
4.4
|
58.6
|
1.0
|
|
N
|
D:SER322
|
4.4
|
70.9
|
1.0
|
|
CA
|
D:ASP448
|
4.4
|
77.2
|
1.0
|
|
N
|
D:GLY449
|
4.5
|
82.2
|
1.0
|
|
OH
|
D:TYR344
|
4.6
|
72.0
|
1.0
|
|
C
|
D:SER322
|
4.6
|
75.4
|
1.0
|
|
OG1
|
D:THR447
|
4.7
|
77.7
|
1.0
|
|
C
|
D:ASP448
|
4.8
|
86.8
|
1.0
|
|
CB
|
D:ASN323
|
4.8
|
56.6
|
1.0
|
|
C
|
D:ASP318
|
4.8
|
79.9
|
1.0
|
|
CA
|
D:ASP318
|
4.9
|
69.8
|
1.0
|
|
O
|
D:ASP318
|
5.0
|
90.7
|
1.0
|
|
Manganese binding site 5 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 5 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn604
b:0.9
occ:0.60
|
O
|
D:ARG363
|
2.0
|
0.8
|
1.0
|
|
OD1
|
D:ASP361
|
2.0
|
95.5
|
1.0
|
|
OD2
|
D:ASP359
|
2.1
|
0.8
|
1.0
|
|
OE2
|
D:GLU392
|
2.1
|
0.2
|
1.0
|
|
C
|
D:ARG363
|
2.9
|
96.9
|
1.0
|
|
CG
|
D:ASP361
|
3.1
|
0.4
|
1.0
|
|
CG
|
D:ASP359
|
3.1
|
0.8
|
1.0
|
|
N
|
D:ARG363
|
3.3
|
0.3
|
1.0
|
|
CD
|
D:GLU392
|
3.4
|
0.4
|
1.0
|
|
OD1
|
D:ASP359
|
3.4
|
0.8
|
1.0
|
|
CA
|
D:ARG363
|
3.4
|
0.9
|
1.0
|
|
OD2
|
D:ASP361
|
3.5
|
0.4
|
1.0
|
|
CB
|
D:ARG363
|
3.7
|
1.0
|
1.0
|
|
ND2
|
D:ASN312
|
3.8
|
0.2
|
1.0
|
|
OE1
|
D:GLU392
|
4.0
|
0.4
|
1.0
|
|
N
|
D:PHE364
|
4.1
|
77.2
|
1.0
|
|
C
|
D:LYS362
|
4.3
|
95.6
|
1.0
|
|
N
|
D:LYS362
|
4.3
|
77.0
|
1.0
|
|
CB
|
D:ASP361
|
4.4
|
84.9
|
1.0
|
|
NZ
|
D:LYS439
|
4.5
|
73.9
|
1.0
|
|
CB
|
D:ASP359
|
4.5
|
92.4
|
1.0
|
|
CG
|
D:GLU392
|
4.6
|
96.9
|
1.0
|
|
CA
|
D:PHE364
|
4.6
|
73.3
|
1.0
|
|
CA
|
D:LYS362
|
4.7
|
85.2
|
1.0
|
|
CB
|
D:ASN312
|
4.7
|
75.8
|
1.0
|
|
CG
|
D:ASN312
|
4.7
|
85.2
|
1.0
|
|
CD1
|
D:PHE364
|
4.8
|
72.5
|
1.0
|
|
CG
|
D:ARG363
|
4.8
|
0.4
|
1.0
|
|
C
|
D:ASP361
|
4.8
|
75.1
|
1.0
|
|
Manganese binding site 6 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 6 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn601
b:0.4
occ:0.70
|
OG1
|
E:THR320
|
2.0
|
79.7
|
1.0
|
|
OD1
|
E:ASP448
|
2.0
|
91.8
|
1.0
|
|
OG
|
E:SER322
|
2.0
|
76.5
|
1.0
|
|
OD2
|
E:ASP318
|
2.1
|
98.3
|
1.0
|
|
OG1
|
E:THR416
|
2.1
|
97.2
|
1.0
|
|
CG
|
E:ASP318
|
3.1
|
69.9
|
1.0
|
|
CB
|
E:THR320
|
3.2
|
78.2
|
1.0
|
|
CG
|
E:ASP448
|
3.3
|
86.3
|
1.0
|
|
CB
|
E:SER322
|
3.4
|
78.3
|
1.0
|
|
OD1
|
E:ASP318
|
3.5
|
78.3
|
1.0
|
|
CB
|
E:THR416
|
3.5
|
88.8
|
1.0
|
|
CG2
|
E:THR320
|
3.5
|
80.4
|
1.0
|
|
N
|
E:GLY449
|
3.9
|
83.2
|
1.0
|
|
CG2
|
E:THR416
|
4.0
|
85.6
|
1.0
|
|
OD2
|
E:ASP448
|
4.1
|
93.8
|
1.0
|
|
OG1
|
E:THR447
|
4.2
|
92.5
|
1.0
|
|
CB
|
E:ASP448
|
4.3
|
79.0
|
1.0
|
|
N
|
E:ASP448
|
4.3
|
81.4
|
1.0
|
|
CA
|
E:GLY449
|
4.4
|
91.0
|
1.0
|
|
CA
|
E:THR320
|
4.4
|
66.5
|
1.0
|
|
CB
|
E:ASP318
|
4.5
|
59.7
|
1.0
|
|
C
|
E:ASP448
|
4.5
|
83.5
|
1.0
|
|
CA
|
E:ASP448
|
4.7
|
78.6
|
1.0
|
|
CA
|
E:THR416
|
4.7
|
83.9
|
1.0
|
|
CA
|
E:SER322
|
4.7
|
53.9
|
1.0
|
|
N
|
E:THR320
|
4.8
|
77.3
|
1.0
|
|
C
|
E:THR320
|
4.9
|
72.1
|
1.0
|
|
O
|
E:THR320
|
4.9
|
94.9
|
1.0
|
|
N
|
E:SER322
|
4.9
|
66.2
|
1.0
|
|
ND2
|
E:ASN323
|
5.0
|
72.3
|
1.0
|
|
C
|
E:GLY449
|
5.0
|
94.4
|
1.0
|
|
Manganese binding site 7 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 7 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn603
b:0.4
occ:0.70
|
OD2
|
F:ASP318
|
1.9
|
0.2
|
1.0
|
|
OD1
|
F:ASP448
|
2.0
|
0.7
|
1.0
|
|
OG1
|
F:THR416
|
2.2
|
83.2
|
1.0
|
|
OG1
|
F:THR320
|
2.2
|
74.4
|
1.0
|
|
OG
|
F:SER322
|
2.2
|
82.0
|
1.0
|
|
OG1
|
F:THR447
|
2.4
|
0.9
|
1.0
|
|
CG
|
F:ASP318
|
3.0
|
79.5
|
1.0
|
|
CG
|
F:ASP448
|
3.3
|
0.4
|
1.0
|
|
OD1
|
F:ASP318
|
3.4
|
0.3
|
1.0
|
|
CB
|
F:THR320
|
3.4
|
73.7
|
1.0
|
|
CB
|
F:THR416
|
3.5
|
69.3
|
1.0
|
|
CB
|
F:SER322
|
3.6
|
74.2
|
1.0
|
|
CG2
|
F:THR320
|
3.7
|
79.3
|
1.0
|
|
N
|
F:GLY449
|
3.7
|
0.7
|
1.0
|
|
CG2
|
F:THR416
|
3.8
|
72.4
|
1.0
|
|
CB
|
F:THR447
|
3.9
|
0.9
|
1.0
|
|
N
|
F:ASP448
|
4.1
|
75.8
|
1.0
|
|
OD2
|
F:ASP448
|
4.1
|
0.5
|
1.0
|
|
CB
|
F:ASP448
|
4.2
|
84.2
|
1.0
|
|
CB
|
F:ASP318
|
4.3
|
69.0
|
1.0
|
|
CA
|
F:GLY449
|
4.3
|
0.4
|
1.0
|
|
C
|
F:ASP448
|
4.4
|
0.5
|
1.0
|
|
CA
|
F:ASP448
|
4.5
|
91.5
|
1.0
|
|
CA
|
F:THR320
|
4.6
|
61.6
|
1.0
|
|
CA
|
F:THR416
|
4.7
|
65.1
|
1.0
|
|
CG2
|
F:THR447
|
4.8
|
88.5
|
1.0
|
|
C
|
F:GLY449
|
4.8
|
0.8
|
1.0
|
|
CA
|
F:SER322
|
4.8
|
71.3
|
1.0
|
|
N
|
F:THR320
|
4.9
|
77.5
|
1.0
|
|
O
|
F:GLY449
|
4.9
|
0.6
|
1.0
|
|
ND2
|
F:ASN323
|
4.9
|
68.2
|
1.0
|
|
Manganese binding site 8 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 8 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn604
b:91.7
occ:0.60
|
OD2
|
F:ASP359
|
2.0
|
88.2
|
1.0
|
|
O
|
F:ARG363
|
2.1
|
0.1
|
1.0
|
|
C
|
F:ARG363
|
2.9
|
73.0
|
1.0
|
|
N
|
F:ARG363
|
2.9
|
79.9
|
1.0
|
|
CG
|
F:ASP359
|
3.0
|
0.3
|
1.0
|
|
CA
|
F:ARG363
|
3.3
|
75.4
|
1.0
|
|
OD1
|
F:ASP359
|
3.4
|
0.1
|
1.0
|
|
CB
|
F:ARG363
|
3.8
|
94.3
|
1.0
|
|
N
|
F:LYS362
|
3.8
|
83.1
|
1.0
|
|
C
|
F:LYS362
|
3.8
|
73.3
|
1.0
|
|
OE1
|
F:GLU392
|
3.9
|
0.5
|
1.0
|
|
OD1
|
F:ASN312
|
4.0
|
0.6
|
1.0
|
|
N
|
F:PHE364
|
4.0
|
71.6
|
1.0
|
|
CB
|
F:ASP361
|
4.1
|
0.3
|
1.0
|
|
CA
|
F:LYS362
|
4.1
|
63.5
|
1.0
|
|
CB
|
F:ASP359
|
4.4
|
90.8
|
1.0
|
|
CD1
|
F:PHE364
|
4.4
|
86.9
|
1.0
|
|
C
|
F:ASP361
|
4.4
|
75.2
|
1.0
|
|
CD
|
F:GLU392
|
4.4
|
0.6
|
1.0
|
|
NZ
|
F:LYS439
|
4.4
|
66.0
|
1.0
|
|
CA
|
F:PHE364
|
4.6
|
75.9
|
1.0
|
|
CG
|
F:ARG363
|
4.7
|
0.5
|
1.0
|
|
CE1
|
F:PHE364
|
4.7
|
82.4
|
1.0
|
|
CG
|
F:ASN312
|
4.7
|
99.8
|
1.0
|
|
CB
|
F:ASN312
|
4.7
|
90.1
|
1.0
|
|
CA
|
F:ASP361
|
4.7
|
78.0
|
1.0
|
|
O
|
F:LYS362
|
4.8
|
74.0
|
1.0
|
|
OE2
|
F:GLU392
|
4.9
|
0.2
|
1.0
|
|
N
|
F:ASP361
|
5.0
|
86.2
|
1.0
|
|
Manganese binding site 9 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 9 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn602
b:0.8
occ:0.70
|
OG1
|
G:THR320
|
2.0
|
67.7
|
1.0
|
|
OG
|
G:SER322
|
2.0
|
51.0
|
1.0
|
|
OD1
|
G:ASP448
|
2.0
|
91.2
|
1.0
|
|
OG1
|
G:THR416
|
2.1
|
82.3
|
1.0
|
|
OD2
|
G:ASP318
|
2.1
|
87.4
|
1.0
|
|
CG
|
G:ASP318
|
3.2
|
69.3
|
1.0
|
|
CB
|
G:THR320
|
3.2
|
65.5
|
1.0
|
|
CG
|
G:ASP448
|
3.3
|
82.7
|
1.0
|
|
CB
|
G:SER322
|
3.4
|
62.1
|
1.0
|
|
CB
|
G:THR416
|
3.5
|
64.4
|
1.0
|
|
OD1
|
G:ASP318
|
3.5
|
78.9
|
1.0
|
|
CG2
|
G:THR320
|
3.6
|
56.7
|
1.0
|
|
N
|
G:GLY449
|
3.9
|
84.2
|
1.0
|
|
CG2
|
G:THR416
|
4.0
|
63.6
|
1.0
|
|
OD2
|
G:ASP448
|
4.1
|
77.6
|
1.0
|
|
OG1
|
G:THR447
|
4.2
|
79.8
|
1.0
|
|
CA
|
G:GLY449
|
4.4
|
74.8
|
1.0
|
|
CB
|
G:ASP448
|
4.4
|
70.8
|
1.0
|
|
N
|
G:ASP448
|
4.4
|
71.2
|
1.0
|
|
CA
|
G:THR320
|
4.4
|
68.2
|
1.0
|
|
C
|
G:ASP448
|
4.5
|
87.0
|
1.0
|
|
CB
|
G:ASP318
|
4.6
|
68.7
|
1.0
|
|
CA
|
G:SER322
|
4.6
|
55.5
|
1.0
|
|
CA
|
G:ASP448
|
4.7
|
68.8
|
1.0
|
|
CA
|
G:THR416
|
4.7
|
70.7
|
1.0
|
|
N
|
G:THR320
|
4.8
|
69.8
|
1.0
|
|
N
|
G:SER322
|
4.9
|
67.5
|
1.0
|
|
C
|
G:THR320
|
4.9
|
72.2
|
1.0
|
|
O
|
G:THR320
|
4.9
|
71.0
|
1.0
|
|
C
|
G:GLY449
|
5.0
|
77.7
|
1.0
|
|
Manganese binding site 10 out
of 10 in 6kxu
Go back to
Manganese Binding Sites List in 6kxu
Manganese binding site 10 out
of 10 in the BON1
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of BON1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mn603
b:0.4
occ:0.70
|
OG1
|
H:THR320
|
2.0
|
69.1
|
1.0
|
|
OG
|
H:SER322
|
2.0
|
52.0
|
1.0
|
|
OD1
|
H:ASP448
|
2.0
|
80.0
|
1.0
|
|
OD2
|
H:ASP318
|
2.1
|
0.3
|
1.0
|
|
OG1
|
H:THR416
|
2.1
|
91.4
|
1.0
|
|
CG
|
H:ASP318
|
3.1
|
92.5
|
1.0
|
|
CB
|
H:THR320
|
3.2
|
63.8
|
1.0
|
|
CG
|
H:ASP448
|
3.3
|
76.0
|
1.0
|
|
CB
|
H:SER322
|
3.4
|
76.2
|
1.0
|
|
OD1
|
H:ASP318
|
3.5
|
0.0
|
1.0
|
|
CB
|
H:THR416
|
3.5
|
72.6
|
1.0
|
|
CG2
|
H:THR320
|
3.5
|
58.5
|
1.0
|
|
N
|
H:GLY449
|
3.9
|
83.3
|
1.0
|
|
CG2
|
H:THR416
|
4.0
|
68.5
|
1.0
|
|
OD2
|
H:ASP448
|
4.0
|
74.2
|
1.0
|
|
OG1
|
H:THR447
|
4.2
|
99.5
|
1.0
|
|
CB
|
H:ASP448
|
4.4
|
70.0
|
1.0
|
|
N
|
H:ASP448
|
4.4
|
94.3
|
1.0
|
|
CA
|
H:GLY449
|
4.4
|
99.6
|
1.0
|
|
CA
|
H:THR320
|
4.4
|
65.5
|
1.0
|
|
CB
|
H:ASP318
|
4.5
|
87.4
|
1.0
|
|
C
|
H:ASP448
|
4.5
|
88.3
|
1.0
|
|
CA
|
H:SER322
|
4.6
|
71.6
|
1.0
|
|
CA
|
H:ASP448
|
4.7
|
79.1
|
1.0
|
|
CA
|
H:THR416
|
4.7
|
75.0
|
1.0
|
|
N
|
H:THR320
|
4.8
|
70.0
|
1.0
|
|
C
|
H:THR320
|
4.9
|
71.9
|
1.0
|
|
N
|
H:SER322
|
4.9
|
78.6
|
1.0
|
|
O
|
H:THR320
|
4.9
|
66.8
|
1.0
|
|
ND2
|
H:ASN323
|
5.0
|
84.4
|
1.0
|
|
Reference:
Q.C.Wang,
M.Q.Jiang,
M.N.Isupov,
L.F.Sun,
Y.K.Wu.
Crystal Structure of An Arabidopsis Copine Providing Insights Into This Protein Family To Be Published.
Page generated: Tue Dec 15 04:56:51 2020
|
