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Manganese in PDB 6klh: Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter

Enzymatic activity of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter

All present enzymatic activity of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter:
2.7.7.48;

Other elements in 6klh:

The structure of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter (pdb code 6klh). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter, PDB code: 6klh:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 6klh

Go back to Manganese Binding Sites List in 6klh
Manganese binding site 1 out of 2 in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn2301

b:0.1
occ:1.00
CG A:ASP1330 2.5 0.1 1.0
OD2 A:ASP1188 2.5 0.6 1.0
OD1 A:ASP1188 2.5 0.6 1.0
OD1 A:ASP1330 2.5 0.1 1.0
OE2 A:GLU1381 2.5 0.3 1.0
OE1 A:GLU1381 2.5 0.3 1.0
OD2 A:ASP1330 2.5 0.1 1.0
CG A:ASP1188 2.8 0.6 1.0
CD A:GLU1381 2.8 0.3 1.0
CB A:ASP1330 3.5 0.1 1.0
CB A:ASP1188 4.2 0.6 1.0
CG A:GLU1381 4.2 0.3 1.0
O A:TYR1187 4.3 0.0 1.0
CA A:ASP1330 4.4 0.1 1.0
C A:TYR1187 4.5 0.0 1.0
N A:ASP1188 4.6 0.6 1.0
CA A:ASP1188 4.7 0.6 1.0
CB A:SER1186 4.9 0.8 1.0

Manganese binding site 2 out of 2 in 6klh

Go back to Manganese Binding Sites List in 6klh
Manganese binding site 2 out of 2 in the Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn2301

b:0.5
occ:1.00
OD2 C:ASP1188 2.5 70.9 1.0
OD1 C:ASP1188 2.5 70.9 1.0
OE2 C:GLU1381 2.5 68.9 1.0
OE1 C:GLU1381 2.5 68.9 1.0
OD1 C:ASP1330 2.5 74.8 1.0
OD2 C:ASP1330 2.5 74.8 1.0
CG C:ASP1330 2.5 74.8 1.0
CG C:ASP1188 2.8 70.9 1.0
CD C:GLU1381 2.8 68.9 1.0
CB C:ASP1330 3.6 74.8 1.0
CB C:ASP1188 4.2 70.9 1.0
CG C:GLU1381 4.2 68.9 1.0
O C:TYR1187 4.4 67.9 1.0
CA C:ASP1330 4.5 74.8 1.0
C C:TYR1187 4.6 67.9 1.0
N C:ASP1188 4.6 70.9 1.0
CA C:ASP1188 4.7 70.9 1.0
CB C:SER1186 4.8 65.0 1.0

Reference:

R.Peng, X.Xu, J.Jing, Q.Peng, G.F.Gao, Y.Shi. Dimeric Structure of Machupo Virus Polymerase Bound to Vrna Promoter To Be Published.
Page generated: Tue Dec 15 04:56:45 2020

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