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Manganese in PDB 6ifn: Crystal Structure of Type III-A Crispr Csm Complex

Protein crystallography data

The structure of Crystal Structure of Type III-A Crispr Csm Complex, PDB code: 6ifn was solved by L.You, J.Wang, Y.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.68 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 123.543, 82.334, 161.358, 90.00, 99.32, 90.00
R / Rfree (%) 20.1 / 24.4

Other elements in 6ifn:

The structure of Crystal Structure of Type III-A Crispr Csm Complex also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Type III-A Crispr Csm Complex (pdb code 6ifn). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Type III-A Crispr Csm Complex, PDB code: 6ifn:

Manganese binding site 1 out of 1 in 6ifn

Go back to Manganese Binding Sites List in 6ifn
Manganese binding site 1 out of 1 in the Crystal Structure of Type III-A Crispr Csm Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Type III-A Crispr Csm Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn802

b:66.7
occ:1.00
OD1 A:ASP16 1.9 62.0 1.0
NE2 A:HIS55 2.1 69.8 1.0
CG A:ASP16 2.7 66.2 1.0
NE2 A:HIS31 2.8 87.4 1.0
OD2 A:ASP16 2.8 59.6 1.0
CD2 A:HIS55 3.1 74.8 1.0
CE1 A:HIS55 3.2 70.5 1.0
CE1 A:HIS31 3.6 91.2 1.0
CD2 A:HIS31 3.8 84.6 1.0
CE A:LYS19 4.1 77.0 1.0
CB A:ASP16 4.1 61.2 1.0
CG A:HIS55 4.3 75.3 1.0
ND1 A:HIS55 4.3 71.3 1.0
NZ A:LYS19 4.4 86.2 1.0
OD2 A:ASP77 4.7 61.7 1.0
CA A:ASP16 4.7 60.1 1.0
ND1 A:HIS31 4.8 81.5 1.0
CD2 A:HIS15 4.8 66.9 1.0
CG A:HIS31 4.9 78.7 1.0

Reference:

L.You, J.Ma, J.Wang, D.Artamonova, M.Wang, L.Liu, H.Xiang, K.Severinov, X.Zhang, Y.Wang. Structure Studies of the Crispr-Csm Complex Reveal Mechanism of Co-Transcriptional Interference Cell V. 176 239 2019.
ISSN: ISSN 1097-4172
PubMed: 30503210
DOI: 10.1016/J.CELL.2018.10.052
Page generated: Tue Dec 15 04:54:38 2020

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