Atomistry » Manganese » PDB 6i90-6jr1 » 6i9l
Atomistry »
  Manganese »
    PDB 6i90-6jr1 »
      6i9l »

Manganese in PDB 6i9l: Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca)

Enzymatic activity of Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca)

All present enzymatic activity of Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca):
1.14.11.27;

Protein crystallography data

The structure of Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca), PDB code: 6i9l was solved by R.Chowdhury, M.S.Islam, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.84 / 1.53
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.591, 64.809, 77.914, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 16.4

Manganese Binding Sites:

The binding sites of Manganese atom in the Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca) (pdb code 6i9l). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca), PDB code: 6i9l:

Manganese binding site 1 out of 1 in 6i9l

Go back to Manganese Binding Sites List in 6i9l
Manganese binding site 1 out of 1 in the Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn501

b:7.3
occ:1.00
 OD2 A:ASP323 2.2 8.3 1.0
O A:HOH664 2.2 10.3 1.0
O21 A:PD2502 2.2 8.6 1.0
N1 A:PD2502 2.2 7.3 1.0
NE2 A:HIS400 2.3 7.3 1.0
NE2 A:HIS321 2.3 9.7 1.0
C21 A:PD2502 3.0 9.7 1.0
C2 A:PD2502 3.0 6.8 1.0
CE1 A:HIS400 3.2 7.1 1.0
CG A:ASP323 3.2 10.1 1.0
CE1 A:HIS321 3.2 9.1 1.0
C6 A:PD2502 3.2 10.2 1.0
HE1 A:HIS400 3.3 8.5 1.0
CD2 A:HIS321 3.3 8.9 1.0
H6 A:PD2502 3.3 12.2 1.0
CD2 A:HIS400 3.3 6.7 1.0
HE1 A:HIS321 3.4 10.9 1.0
HD2 A:HIS321 3.5 10.6 1.0
OD1 A:ASP323 3.5 11.0 1.0
HZ2 A:TRP414 3.5 12.9 1.0
HD2 A:HIS400 3.5 8.0 1.0
O A:HOH674 3.9 14.8 1.0
HE1 A:TRP414 4.1 13.1 1.0
O22 A:PD2502 4.2 10.8 1.0
CZ2 A:TRP414 4.3 10.8 1.0
ND1 A:HIS400 4.3 6.1 1.0
ND1 A:HIS321 4.4 9.0 1.0
HD22 A:ASN327 4.4 10.5 1.0
C3 A:PD2502 4.4 6.6 1.0
O A:HOH807 4.4 19.1 1.0
CG A:HIS400 4.4 5.2 1.0
CG A:HIS321 4.4 8.3 1.0
CB A:ASP323 4.5 8.5 1.0
C5 A:PD2502 4.5 8.4 1.0
HB2 A:ASP323 4.6 10.2 1.0
HH2 A:TRP310 4.7 10.7 1.0
NE1 A:TRP414 4.7 10.9 1.0
HD21 A:ASN327 4.8 10.5 1.0
HZ2 A:TRP310 4.8 10.1 1.0
CE2 A:TRP414 4.8 8.5 1.0
ND2 A:ASN327 4.9 8.8 1.0
C4 A:PD2502 5.0 6.3 1.0

Reference:

S.Islam, C.J.Schofield, R.Chowdhury. Jmjc Domain-Containing Protein 5 (JMJD5) in Complex with Mn and Pyridine-2,4-Dicarboxylic Acid (2,4-Pdca) To Be Published.
Page generated: Sun Oct 6 04:52:56 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy