Manganese in PDB 6h1c: Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Protein crystallography data
The structure of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese., PDB code: 6h1c
was solved by
S.Nader,
J.Perard,
P.Carpentier,
I.Michaud-Soret,
S.Crouzy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.12 /
2.34
|
Space group
|
P 61 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.570,
85.570,
179.620,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
20.1 /
26.8
|
Other elements in 6h1c:
The structure of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. also contains other interesting chemical elements:
Manganese Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Manganese atom in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
(pdb code 6h1c). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 11 binding sites of Manganese where determined in the
Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese., PDB code: 6h1c:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 1 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn201
b:22.6
occ:1.00
|
OE2
|
A:GLU80
|
1.6
|
27.4
|
1.0
|
NE2
|
A:HIS32
|
1.8
|
24.6
|
1.0
|
NE2
|
A:HIS89
|
1.9
|
27.4
|
1.0
|
OE2
|
A:GLU100
|
2.0
|
28.6
|
1.0
|
CD
|
A:GLU80
|
2.3
|
27.7
|
1.0
|
OE1
|
A:GLU80
|
2.6
|
28.7
|
1.0
|
CE1
|
A:HIS32
|
2.6
|
26.9
|
1.0
|
CE1
|
A:HIS89
|
2.7
|
26.4
|
1.0
|
CD
|
A:GLU100
|
2.9
|
36.3
|
1.0
|
CD2
|
A:HIS32
|
3.0
|
30.0
|
1.0
|
CD2
|
A:HIS89
|
3.0
|
27.6
|
1.0
|
CG
|
A:GLU100
|
3.2
|
30.5
|
1.0
|
CG
|
A:GLU80
|
3.6
|
32.8
|
1.0
|
ND1
|
A:HIS32
|
3.8
|
30.5
|
1.0
|
ND1
|
A:HIS89
|
3.9
|
21.3
|
1.0
|
CG
|
A:HIS32
|
4.0
|
27.0
|
1.0
|
CG
|
A:HIS89
|
4.1
|
22.5
|
1.0
|
OE1
|
A:GLU100
|
4.1
|
41.4
|
1.0
|
O
|
A:GLY85
|
4.1
|
39.4
|
1.0
|
CA
|
A:ALA86
|
4.3
|
32.2
|
1.0
|
CB
|
A:GLU100
|
4.7
|
31.4
|
1.0
|
CB
|
A:GLU80
|
4.7
|
24.8
|
1.0
|
ZN
|
A:ZN212
|
4.9
|
70.0
|
1.0
|
C
|
A:ALA86
|
4.9
|
34.7
|
1.0
|
C
|
A:GLY85
|
4.9
|
39.6
|
1.0
|
O
|
A:ALA86
|
4.9
|
37.9
|
1.0
|
|
Manganese binding site 2 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 2 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn202
b:39.9
occ:1.00
|
O
|
A:HOH314
|
1.6
|
35.2
|
1.0
|
OD2
|
A:ASP88
|
1.9
|
36.4
|
1.0
|
OE2
|
A:GLU107
|
1.9
|
42.5
|
1.0
|
O
|
A:HOH333
|
2.0
|
39.0
|
1.0
|
CD
|
A:GLU107
|
2.7
|
42.3
|
1.0
|
OE1
|
A:GLU107
|
2.9
|
40.3
|
1.0
|
CG
|
A:ASP88
|
2.9
|
31.6
|
1.0
|
OD1
|
A:ASP88
|
3.3
|
38.3
|
1.0
|
O
|
A:HOH328
|
3.7
|
37.3
|
1.0
|
O
|
A:HOH309
|
3.8
|
39.9
|
1.0
|
CG
|
A:GLU107
|
4.2
|
42.6
|
1.0
|
OE1
|
A:GLN110
|
4.2
|
44.4
|
1.0
|
CB
|
A:ASP88
|
4.3
|
29.3
|
1.0
|
NE2
|
A:GLN110
|
4.5
|
34.5
|
1.0
|
CB
|
A:HIS87
|
4.6
|
32.3
|
1.0
|
O
|
A:HIS87
|
4.8
|
29.0
|
1.0
|
SD
|
A:MET102
|
4.8
|
55.6
|
1.0
|
C
|
A:HIS87
|
4.8
|
27.4
|
1.0
|
CD
|
A:GLN110
|
4.8
|
39.6
|
1.0
|
O
|
A:ALA124
|
4.8
|
32.4
|
1.0
|
N
|
A:ASP88
|
4.9
|
26.7
|
1.0
|
CE
|
A:MET102
|
4.9
|
46.8
|
1.0
|
CB
|
A:ALA124
|
5.0
|
24.4
|
1.0
|
|
Manganese binding site 3 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 3 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn203
b:41.2
occ:1.00
|
MN
|
A:MN204
|
2.2
|
24.7
|
1.0
|
OE1
|
A:GLU36
|
3.0
|
26.1
|
1.0
|
CG
|
A:GLU36
|
3.4
|
25.8
|
1.0
|
N
|
A:GLU36
|
3.5
|
28.9
|
1.0
|
O
|
A:HOH316
|
3.6
|
24.5
|
1.0
|
CD
|
A:GLU36
|
3.6
|
33.0
|
1.0
|
CB
|
A:GLU36
|
3.8
|
23.9
|
1.0
|
OG
|
A:SER34
|
4.0
|
30.3
|
1.0
|
CB
|
A:SER34
|
4.0
|
28.0
|
1.0
|
N
|
A:ALA35
|
4.0
|
29.1
|
1.0
|
O
|
A:HOH348
|
4.1
|
31.6
|
1.0
|
CB
|
A:ALA35
|
4.2
|
25.9
|
1.0
|
CA
|
A:GLU36
|
4.3
|
30.1
|
1.0
|
O
|
A:HOH311
|
4.3
|
34.0
|
1.0
|
CA
|
A:ALA35
|
4.4
|
28.9
|
1.0
|
C
|
A:ALA35
|
4.5
|
28.8
|
1.0
|
OE2
|
A:GLU36
|
4.8
|
41.8
|
1.0
|
C
|
A:SER34
|
4.8
|
27.1
|
1.0
|
CA
|
A:SER34
|
4.9
|
26.4
|
1.0
|
|
Manganese binding site 4 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 4 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn204
b:24.7
occ:1.00
|
OE1
|
A:GLU36
|
1.7
|
26.1
|
1.0
|
MN
|
A:MN203
|
2.2
|
41.2
|
1.0
|
CD
|
A:GLU36
|
2.7
|
33.0
|
1.0
|
CG
|
A:GLU36
|
3.2
|
25.8
|
1.0
|
OE2
|
A:GLU36
|
3.8
|
41.8
|
1.0
|
CB
|
A:GLU36
|
4.2
|
23.9
|
1.0
|
O
|
A:HOH348
|
4.3
|
31.6
|
1.0
|
N
|
A:GLU36
|
4.9
|
28.9
|
1.0
|
|
Manganese binding site 5 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 5 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn205
b:55.6
occ:1.00
|
O
|
A:HOH332
|
2.7
|
39.5
|
1.0
|
CG
|
A:GLU105
|
2.7
|
53.8
|
1.0
|
OE2
|
A:GLU105
|
2.8
|
69.1
|
1.0
|
CD
|
A:GLU105
|
3.2
|
68.2
|
1.0
|
CB
|
A:GLU105
|
4.1
|
44.7
|
1.0
|
O
|
A:GLU105
|
4.1
|
42.7
|
1.0
|
CB
|
A:ARG109
|
4.3
|
39.3
|
1.0
|
C
|
A:GLU105
|
4.4
|
44.3
|
1.0
|
OE1
|
A:GLU105
|
4.5
|
71.6
|
1.0
|
CA
|
A:GLU105
|
4.5
|
42.6
|
1.0
|
CG
|
A:ARG109
|
4.6
|
44.7
|
1.0
|
CD
|
A:ARG109
|
4.6
|
50.4
|
1.0
|
|
Manganese binding site 6 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 6 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn206
b:44.9
occ:1.00
|
OD2
|
A:ASP73
|
2.4
|
32.5
|
1.0
|
ND1
|
A:HIS76
|
2.4
|
31.4
|
1.0
|
CE1
|
A:HIS76
|
3.1
|
34.1
|
1.0
|
CG
|
A:ASP73
|
3.2
|
32.1
|
1.0
|
OD1
|
A:ASP73
|
3.4
|
29.2
|
1.0
|
CG
|
A:HIS76
|
3.5
|
30.6
|
1.0
|
O
|
A:HOH307
|
3.7
|
33.3
|
1.0
|
CB
|
A:HIS76
|
3.9
|
27.4
|
1.0
|
NE2
|
A:HIS76
|
4.2
|
32.6
|
1.0
|
N
|
A:HIS76
|
4.3
|
23.2
|
1.0
|
CD2
|
A:HIS76
|
4.4
|
33.0
|
1.0
|
CB
|
A:ASP73
|
4.6
|
25.5
|
1.0
|
CA
|
A:HIS76
|
4.7
|
25.7
|
1.0
|
C
|
A:GLY75
|
4.9
|
27.2
|
1.0
|
O
|
A:HOH323
|
5.0
|
30.2
|
1.0
|
CA
|
A:GLY75
|
5.0
|
25.3
|
1.0
|
|
Manganese binding site 7 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 7 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn207
b:42.2
occ:1.00
|
MN
|
A:MN208
|
1.6
|
52.2
|
1.0
|
ND1
|
A:HIS70
|
2.0
|
25.4
|
1.0
|
O
|
A:HOH352
|
2.2
|
26.7
|
1.0
|
O
|
A:HOH339
|
2.8
|
28.8
|
1.0
|
CE1
|
A:HIS70
|
2.8
|
24.3
|
1.0
|
CG
|
A:HIS70
|
3.1
|
29.4
|
1.0
|
CB
|
A:HIS70
|
3.5
|
21.2
|
1.0
|
CA
|
A:HIS70
|
3.9
|
24.7
|
1.0
|
NE2
|
A:HIS70
|
3.9
|
27.6
|
1.0
|
O
|
A:HOH324
|
4.1
|
30.2
|
1.0
|
CD2
|
A:HIS70
|
4.1
|
28.7
|
1.0
|
O
|
A:ARG69
|
4.2
|
26.0
|
1.0
|
CG2
|
A:VAL127
|
4.6
|
20.5
|
1.0
|
CE1
|
A:PHE72
|
4.7
|
21.3
|
1.0
|
N
|
A:HIS70
|
4.8
|
25.2
|
1.0
|
C
|
A:ARG69
|
4.9
|
24.7
|
1.0
|
ND2
|
A:ASN125
|
5.0
|
41.6
|
1.0
|
CG
|
A:ASN125
|
5.0
|
34.5
|
1.0
|
N
|
A:ASN71
|
5.0
|
27.9
|
1.0
|
|
Manganese binding site 8 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 8 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn208
b:52.2
occ:1.00
|
MN
|
A:MN207
|
1.6
|
42.2
|
1.0
|
O
|
A:HOH352
|
2.7
|
26.7
|
1.0
|
ND1
|
A:HIS70
|
3.0
|
25.4
|
1.0
|
CB
|
A:HIS70
|
3.4
|
21.2
|
1.0
|
CG
|
A:HIS70
|
3.6
|
29.4
|
1.0
|
CA
|
A:HIS70
|
3.7
|
24.7
|
1.0
|
N
|
A:ASN71
|
3.9
|
27.9
|
1.0
|
O
|
A:HOH339
|
3.9
|
28.8
|
1.0
|
CE1
|
A:HIS70
|
4.1
|
24.3
|
1.0
|
C
|
A:HIS70
|
4.4
|
26.9
|
1.0
|
CE1
|
A:PHE72
|
4.5
|
21.3
|
1.0
|
CG2
|
A:VAL127
|
4.5
|
20.5
|
1.0
|
O
|
A:ARG69
|
4.6
|
26.0
|
1.0
|
CD1
|
A:PHE72
|
4.8
|
20.9
|
1.0
|
O
|
A:ASN71
|
4.8
|
23.6
|
1.0
|
CD2
|
A:HIS70
|
4.9
|
28.7
|
1.0
|
N
|
A:HIS70
|
4.9
|
25.2
|
1.0
|
O
|
A:HOH324
|
4.9
|
30.2
|
1.0
|
C
|
A:ASN71
|
4.9
|
23.3
|
1.0
|
|
Manganese binding site 9 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 9 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn201
b:46.4
occ:1.00
|
MN
|
B:MN202
|
2.4
|
41.2
|
1.0
|
O
|
B:HOH309
|
3.4
|
24.9
|
1.0
|
N
|
B:GLU36
|
3.7
|
25.9
|
1.0
|
CG
|
B:GLU36
|
3.9
|
31.4
|
1.0
|
CB
|
B:GLU36
|
4.0
|
27.0
|
1.0
|
N
|
B:ALA35
|
4.0
|
27.7
|
1.0
|
CB
|
B:SER34
|
4.0
|
23.7
|
1.0
|
OE2
|
B:GLU36
|
4.1
|
37.1
|
1.0
|
OG
|
B:SER34
|
4.2
|
25.2
|
1.0
|
CB
|
B:ALA35
|
4.2
|
23.7
|
1.0
|
O
|
B:HOH330
|
4.4
|
30.6
|
1.0
|
CD
|
B:GLU36
|
4.5
|
37.3
|
1.0
|
CA
|
B:ALA35
|
4.5
|
25.2
|
1.0
|
CA
|
B:GLU36
|
4.5
|
32.9
|
1.0
|
C
|
B:ALA35
|
4.5
|
23.3
|
1.0
|
O
|
B:HOH332
|
4.7
|
38.9
|
1.0
|
C
|
B:SER34
|
4.8
|
24.2
|
1.0
|
CA
|
B:SER34
|
4.9
|
22.2
|
1.0
|
|
Manganese binding site 10 out
of 11 in 6h1c
Go back to
Manganese Binding Sites List in 6h1c
Manganese binding site 10 out
of 11 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.
Mono view
Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn202
b:41.2
occ:1.00
|
MN
|
B:MN201
|
2.4
|
46.4
|
1.0
|
OE2
|
B:GLU36
|
3.0
|
37.1
|
1.0
|
CG
|
B:GLU36
|
3.8
|
31.4
|
1.0
|
CD
|
B:GLU36
|
3.8
|
37.3
|
1.0
|
O
|
B:HOH332
|
4.6
|
38.9
|
1.0
|
CB
|
B:GLU36
|
4.7
|
27.0
|
1.0
|
|
Reference:
S.Nader,
J.Perard,
P.Carpentier,
I.Michaud-Soret,
S.Crouzy.
Ferric Uptake Regulator with Mn and Zn Form Pseudomonas Aeruginosa To Be Published.
Page generated: Sun Oct 6 04:47:12 2024
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