Atomistry » Manganese » PDB 6fxx-6i90 » 6g8f
Atomistry »
  Manganese »
    PDB 6fxx-6i90 »
      6g8f »

Manganese in PDB 6g8f: Crystal Structure of Utx Complexed with Gsk-J1

Protein crystallography data

The structure of Crystal Structure of Utx Complexed with Gsk-J1, PDB code: 6g8f was solved by C.Esposito, P.Sledz, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.92 / 2.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.781, 82.338, 92.397, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 23.6

Other elements in 6g8f:

The structure of Crystal Structure of Utx Complexed with Gsk-J1 also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Utx Complexed with Gsk-J1 (pdb code 6g8f). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Utx Complexed with Gsk-J1, PDB code: 6g8f:

Manganese binding site 1 out of 1 in 6g8f

Go back to Manganese Binding Sites List in 6g8f
Manganese binding site 1 out of 1 in the Crystal Structure of Utx Complexed with Gsk-J1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Utx Complexed with Gsk-J1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1501

b:40.9
occ:1.00
OE1 A:GLU1148 2.2 38.4 1.0
O A:HOH1690 2.3 42.6 1.0
NE2 A:HIS1146 2.3 40.7 1.0
N4 A:K0I1503 2.3 40.5 1.0
N3 A:K0I1503 2.4 39.7 1.0
O A:HOH1623 2.4 37.3 1.0
C8 A:K0I1503 3.1 44.3 1.0
C7 A:K0I1503 3.1 43.8 1.0
CD A:GLU1148 3.2 36.9 1.0
C12 A:K0I1503 3.2 40.5 1.0
CD2 A:HIS1146 3.3 41.5 1.0
CE1 A:HIS1146 3.3 41.8 1.0
C4 A:K0I1503 3.4 39.6 1.0
OE2 A:GLU1148 3.5 36.9 1.0
N1 A:K0I1503 3.5 41.1 1.0
NE2 A:HIS1226 3.9 45.0 1.0
CE1 A:HIS1226 4.2 35.9 1.0
O A:HOH1630 4.4 45.8 1.0
ND1 A:HIS1146 4.4 42.3 1.0
CG A:HIS1146 4.4 40.4 1.0
C9 A:K0I1503 4.4 46.5 1.0
N2 A:K0I1503 4.4 39.5 1.0
C11 A:K0I1503 4.5 44.9 1.0
CG A:GLU1148 4.6 33.4 1.0
C5 A:K0I1503 4.7 38.8 1.0
O A:HOH1754 4.8 48.9 1.0
C3 A:K0I1503 4.9 39.5 1.0
O A:HOH1681 5.0 36.2 1.0

Reference:

C.Esposito, L.Wiedmer, A.Caflisch. In Silico Identification of JMJD3 Demethylase Inhibitors. J Chem Inf Model V. 58 2151 2018.
ISSN: ESSN 1549-960X
PubMed: 30226987
DOI: 10.1021/ACS.JCIM.8B00539
Page generated: Tue Dec 15 04:53:51 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy