Atomistry » Manganese » PDB 6f4q-6fxr » 6f6b
Atomistry »
  Manganese »
    PDB 6f4q-6fxr »
      6f6b »

Manganese in PDB 6f6b: R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor

Enzymatic activity of R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor

All present enzymatic activity of R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor:
1.17.4.1;

Protein crystallography data

The structure of R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor, PDB code: 6f6b was solved by J.J.Griese, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.62 / 2.01
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.983, 98.065, 127.626, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 22.6

Other elements in 6f6b:

The structure of R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor (pdb code 6f6b). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor, PDB code: 6f6b:

Manganese binding site 1 out of 1 in 6f6b

Go back to Manganese Binding Sites List in 6f6b
Manganese binding site 1 out of 1 in the R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of R2-Like Ligand-Binding Oxidase A171F Mutant with Anaerobically Reconstituted Mn/Fe Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn403

b:38.0
occ:1.00
 OE1 A:GLU102 2.1 32.0 1.0
ND1 A:HIS105 2.1 31.3 1.0
OE1 A:GLU69 2.2 33.2 1.0
O A:HOH504 2.2 45.6 1.0
OE2 A:GLU202 2.3 47.6 1.0
CE1 A:HIS105 2.9 40.2 1.0
HE1 A:HIS105 3.0 48.2 1.0
CD A:GLU69 3.1 41.7 1.0
CD A:GLU102 3.2 31.2 1.0
CG A:HIS105 3.2 38.6 1.0
OE2 A:GLU69 3.3 48.2 1.0
CD A:GLU202 3.4 40.3 1.0
HB2 A:HIS105 3.4 56.2 1.0
OE2 A:GLU167 3.6 42.8 1.0
HA A:GLU102 3.6 38.4 1.0
OE2 A:GLU102 3.6 36.1 1.0
HB3 A:HIS105 3.6 56.2 1.0
CB A:HIS105 3.7 46.9 1.0
HG21 A:VAL72 3.7 37.6 1.0
FE A:FE2401 3.7 37.0 1.0
HG A:LEU198 4.0 48.8 1.0
NE2 A:HIS105 4.1 36.1 1.0
HH A:TYR175 4.1 78.6 1.0
HE1 A:HIS205 4.1 43.8 1.0
HG2 A:GLU202 4.1 58.7 1.0
HG3 A:GLU202 4.2 58.7 1.0
CG A:GLU202 4.2 48.9 1.0
OE1 A:GLU202 4.2 39.6 1.0
CD2 A:HIS105 4.2 36.9 1.0
HA A:GLU69 4.3 49.3 1.0
HD21 A:LEU198 4.3 55.5 1.0
HE2 A:PHE171 4.3 47.4 1.0
HD11 A:LEU198 4.3 49.1 1.0
HG23 A:VAL72 4.4 37.6 1.0
CG2 A:VAL72 4.4 31.3 1.0
CA A:GLU102 4.5 32.0 1.0
CG A:GLU102 4.5 34.1 1.0
HD2 A:PHE171 4.5 45.4 1.0
CG A:GLU69 4.5 44.0 1.0
OH A:TYR175 4.6 65.5 1.0
HB3 A:GLU102 4.6 37.0 1.0
HB3 A:GLU69 4.7 45.5 1.0
CG A:LEU198 4.7 40.7 1.0
HG22 A:VAL72 4.7 37.6 1.0
CE1 A:HIS205 4.7 36.5 1.0
CB A:GLU102 4.7 30.8 1.0
CD A:GLU167 4.8 35.8 1.0
HG3 A:GLU69 4.8 52.8 1.0
CE2 A:PHE171 4.8 39.5 1.0
ND1 A:HIS205 4.9 31.6 1.0
HE2 A:HIS105 4.9 43.3 1.0
CD2 A:PHE171 4.9 37.9 1.0
CD2 A:LEU198 4.9 46.3 1.0
CD1 A:LEU198 5.0 41.0 1.0
CB A:GLU69 5.0 37.9 1.0

Reference:

J.J.Griese, R.Kositzki, M.Haumann, M.Hogbom. Assembly of A Heterodinuclear Mn/Fe Cofactor Is Coupled to Tyrosine-Valine Ether Cross-Link Formation in the R2-Like Ligand-Binding Oxidase. J. Biol. Inorg. Chem. V. 24 211 2019.
ISSN: ESSN 1432-1327
PubMed: 30689052
DOI: 10.1007/S00775-019-01639-4
Page generated: Sun Oct 6 04:32:27 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy