Manganese in PDB 6ey1: Prolyl Hydroxylase From Trichoplax Adhaerens

The structure of Prolyl Hydroxylase From Trichoplax Adhaerens, PDB code: 6ey1 was solved by M.A.Mcdonough, A.Boleininger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.87 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.579, 59.413, 51.202, 90.00, 100.74, 90.00
R / Rfree (%)	12.2 / 13.8

The binding sites of Manganese atom in the Prolyl Hydroxylase From Trichoplax Adhaerens (pdb code 6ey1). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Prolyl Hydroxylase From Trichoplax Adhaerens, PDB code: 6ey1:

Manganese binding site 1 out of 1 in the Prolyl Hydroxylase From Trichoplax Adhaerens


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Prolyl Hydroxylase From Trichoplax Adhaerens within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn405 b:10.9 occ:1.00 O A:HOH505 2.0 19.0 1.0 NE2 A:HIS270 2.1 14.1 1.0 OD1 A:ASP211 2.1 12.7 1.0 O A:HOH534 2.1 11.5 1.0 NE2 A:HIS209 2.1 13.4 1.0 O A:ACT402 2.2 15.9 0.8 C A:ACT402 3.0 22.4 0.8 CE1 A:HIS270 3.0 13.4 1.0 CE1 A:HIS209 3.0 15.1 1.0 CG A:ASP211 3.1 12.5 1.0 CD2 A:HIS270 3.1 13.2 1.0 CD2 A:HIS209 3.1 14.3 1.0 OXT A:ACT402 3.4 23.9 0.8 OD2 A:ASP211 3.4 11.6 1.0 O A:HOH513 3.8 33.7 1.0 ND1 A:HIS270 4.1 12.9 1.0 ND1 A:HIS209 4.2 15.7 1.0 O A:HOH553 4.2 14.9 1.0 CG A:HIS270 4.2 12.8 1.0 CG A:HIS209 4.3 15.0 1.0 CH3 A:ACT402 4.4 22.1 0.8 CB A:ASP211 4.5 12.9 1.0 CA A:ASP211 4.8 13.0 1.0 CH3 A:ACT403 4.8 18.0 1.0 CE2 A:TYR206 4.9 26.3 1.0 CZ A:PHE262 4.9 11.7 1.0 N A:ASP211 4.9 13.3 1.0

K.Lippl, A.Boleininger, M.A.Mcdonough, M.I.Abboud, H.Tarhonskaya, R.Chowdhury, C.Loenarz, C.J.Schofield. Born to Sense: Biophysical Analyses of the Oxygen Sensing Prolyl Hydroxylase From the Simplest Animal Trichoplax Adhaerens. Hypoxia (Auckl) V. 6 57 2018.
ISSN: ISSN 2324-1128
PubMed: 30519597
DOI: 10.2147/HP.S174655