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Manganese in PDB 6eva: Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor

Enzymatic activity of Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor

All present enzymatic activity of Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor:
4.1.1.102;

Protein crystallography data

The structure of Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor, PDB code: 6eva was solved by S.S.Bailey, L.David, K.A.P.Payne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.14 / 1.64
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 96.270, 63.730, 87.420, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 17.6

Other elements in 6eva:

The structure of Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor also contains other interesting chemical elements:

Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor (pdb code 6eva). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor, PDB code: 6eva:

Manganese binding site 1 out of 1 in 6eva

Go back to Manganese Binding Sites List in 6eva
Manganese binding site 1 out of 1 in the Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of E277Q A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn601

b:12.6
occ:1.00
 OE2 A:GLU233 2.1 8.2 1.0
O A:HOH737 2.2 9.1 1.0
OD1 A:ASN168 2.2 9.4 1.0
O2 A:4MJ604 2.2 8.3 1.0
O A:HOH837 2.2 8.8 1.0
ND1 A:HIS191 2.3 9.0 1.0
CG A:ASN168 3.1 8.5 1.0
CD A:GLU233 3.2 9.6 1.0
CE1 A:HIS191 3.2 9.7 1.0
P1 A:4MJ604 3.4 8.7 1.0
CG A:HIS191 3.4 9.6 1.0
ND2 A:ASN168 3.5 8.8 1.0
OE1 A:GLU233 3.5 9.9 1.0
O1 A:4MJ604 3.6 9.3 1.0
K A:K602 3.7 9.6 1.0
CB A:HIS191 3.8 9.3 1.0
O3 A:4MJ604 4.2 9.2 1.0
O A:ILE227 4.3 10.6 1.0
CG1 A:ILE227 4.3 13.2 1.0
NE2 A:HIS191 4.4 9.6 1.0
CZ2 A:TRP166 4.4 12.9 1.0
CB A:ASN168 4.4 8.3 1.0
CG A:GLU233 4.5 9.6 1.0
O4 A:4MJ604 4.5 8.5 1.0
CD2 A:HIS191 4.5 9.9 1.0
O A:VAL231 4.5 11.6 1.0
O A:TRP169 4.6 9.4 1.0
NE1 A:TRP166 4.6 12.2 1.0
O A:PRO228 4.7 11.9 1.0
CE2 A:TRP166 4.9 11.9 1.0
CA A:ASN168 5.0 9.4 1.0

Reference:

S.S.Bailey, K.A.P.Payne, K.Fisher, S.A.Marshall, M.J.Cliff, R.Spiess, D.A.Parker, S.E.J.Rigby, D.Leys. The Role of Conserved Residues in Fdc Decarboxylase in Prenylated Flavin Mononucleotide Oxidative Maturation, Cofactor Isomerization, and Catalysis. J. Biol. Chem. V. 293 2272 2018.
ISSN: ESSN 1083-351X
PubMed: 29259125
DOI: 10.1074/JBC.RA117.000881
Page generated: Sun Oct 6 04:21:12 2024

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