Atomistry » Manganese » PDB 6bh5-6dk4 » 6cyl
Atomistry »
  Manganese »
    PDB 6bh5-6dk4 »
      6cyl »

Manganese in PDB 6cyl: Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei

Enzymatic activity of Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei

All present enzymatic activity of Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei, PDB code: 6cyl was solved by E.Mendoza Rengifo, R.C.Garratt, H.M.Pereira, J.R.S.Ferreira Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 79.14 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.571, 78.433, 158.283, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 26.1

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei (pdb code 6cyl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei, PDB code: 6cyl:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 6cyl

Go back to Manganese Binding Sites List in 6cyl
Manganese binding site 1 out of 4 in the Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn301

b:8.1
occ:1.00
 O A:HOH449 1.9 8.6 1.0
OD2 A:ASP163 2.0 7.6 1.0
NE2 A:HIS167 2.1 9.3 1.0
NE2 A:HIS30 2.1 10.0 1.0
NE2 A:HIS78 2.2 6.1 1.0
CE1 A:HIS167 3.0 8.9 1.0
CE1 A:HIS30 3.1 9.7 1.0
CE1 A:HIS78 3.1 4.4 1.0
CG A:ASP163 3.1 7.8 1.0
CD2 A:HIS30 3.2 10.0 1.0
CD2 A:HIS167 3.2 9.1 1.0
CD2 A:HIS78 3.3 6.8 1.0
OD1 A:ASP163 3.7 7.5 1.0
ND1 A:HIS167 4.2 5.1 1.0
ND1 A:HIS30 4.2 9.2 1.0
ND1 A:HIS78 4.3 5.6 1.0
CG A:HIS30 4.3 9.6 1.0
CG A:HIS167 4.3 7.7 1.0
CZ2 A:TRP131 4.3 6.1 1.0
CB A:ASP163 4.3 9.9 1.0
CG A:HIS78 4.4 7.2 1.0
CB A:TRP165 4.4 6.6 1.0
CG A:TRP165 4.5 8.3 1.0
OH A:TYR38 4.5 17.3 1.0
NE2 A:GLN74 4.6 8.3 1.0
CD1 A:TRP165 4.8 5.5 1.0
CE2 A:TYR38 4.9 9.3 1.0
CE2 A:TRP131 5.0 5.0 1.0

Manganese binding site 2 out of 4 in 6cyl

Go back to Manganese Binding Sites List in 6cyl
Manganese binding site 2 out of 4 in the Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn301

b:8.6
occ:1.00
 OD2 B:ASP163 2.0 11.8 1.0
NE2 B:HIS78 2.1 11.4 1.0
O B:HOH469 2.1 6.7 1.0
NE2 B:HIS30 2.1 7.0 1.0
NE2 B:HIS167 2.2 9.9 1.0
CE1 B:HIS78 3.0 10.9 1.0
CE1 B:HIS30 3.0 7.0 1.0
CG B:ASP163 3.1 9.9 1.0
CE1 B:HIS167 3.1 8.6 1.0
CD2 B:HIS30 3.2 8.6 1.0
CD2 B:HIS78 3.2 10.9 1.0
CD2 B:HIS167 3.2 7.7 1.0
OD1 B:ASP163 3.6 11.2 1.0
ND1 B:HIS78 4.2 10.9 1.0
ND1 B:HIS30 4.2 7.6 1.0
ND1 B:HIS167 4.2 9.5 1.0
CG B:HIS78 4.3 11.9 1.0
CG B:HIS30 4.3 9.9 1.0
CB B:ASP163 4.3 7.4 1.0
CG B:HIS167 4.3 8.6 1.0
CZ2 B:TRP131 4.3 12.0 1.0
CB B:TRP165 4.4 5.3 1.0
OH B:TYR38 4.4 23.5 1.0
CG B:TRP165 4.6 6.7 1.0
NE2 B:GLN74 4.6 6.4 1.0
CD1 B:TRP165 4.9 7.1 1.0
CE2 B:TYR38 5.0 16.9 1.0
CH2 B:TRP131 5.0 9.6 1.0

Manganese binding site 3 out of 4 in 6cyl

Go back to Manganese Binding Sites List in 6cyl
Manganese binding site 3 out of 4 in the Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn301

b:8.9
occ:1.00
 OD2 C:ASP163 2.0 12.2 1.0
O C:HOH453 2.1 7.8 1.0
NE2 C:HIS30 2.1 11.2 1.0
NE2 C:HIS78 2.2 16.2 1.0
NE2 C:HIS167 2.3 11.2 1.0
O C:HOH454 2.5 23.0 1.0
CE1 C:HIS30 3.0 8.8 1.0
CE1 C:HIS78 3.1 13.7 1.0
CD2 C:HIS30 3.1 11.9 1.0
CG C:ASP163 3.1 9.6 1.0
CD2 C:HIS78 3.2 15.2 1.0
CE1 C:HIS167 3.2 10.4 1.0
CD2 C:HIS167 3.3 10.8 1.0
OD1 C:ASP163 3.7 8.5 1.0
ND1 C:HIS30 4.1 12.1 1.0
ND1 C:HIS78 4.2 15.3 1.0
CZ2 C:TRP131 4.2 9.3 1.0
CG C:HIS30 4.2 12.8 1.0
CG C:HIS78 4.3 15.8 1.0
CB C:ASP163 4.3 9.3 1.0
ND1 C:HIS167 4.4 9.9 1.0
CG C:HIS167 4.4 9.3 1.0
CB C:TRP165 4.5 7.7 1.0
NE2 C:GLN74 4.6 7.8 1.0
CG C:TRP165 4.7 7.3 1.0
CH2 C:TRP131 4.8 9.0 1.0
CD1 C:TRP165 4.9 7.5 1.0
OH C:TYR38 4.9 26.1 1.0
CE2 C:TRP131 5.0 8.3 1.0

Manganese binding site 4 out of 4 in 6cyl

Go back to Manganese Binding Sites List in 6cyl
Manganese binding site 4 out of 4 in the Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn301

b:11.1
occ:1.00
 OD2 D:ASP163 1.8 18.5 1.0
O D:HOH454 2.1 10.0 1.0
NE2 D:HIS30 2.2 18.6 1.0
NE2 D:HIS78 2.2 16.2 1.0
NE2 D:HIS167 2.3 14.6 1.0
CG D:ASP163 3.0 12.3 1.0
CE1 D:HIS78 3.1 15.4 1.0
CE1 D:HIS30 3.1 18.2 1.0
CD2 D:HIS30 3.2 19.7 1.0
CE1 D:HIS167 3.2 11.4 1.0
CD2 D:HIS78 3.2 16.8 1.0
CD2 D:HIS167 3.3 11.7 1.0
OD1 D:ASP163 3.6 17.4 1.0
CZ2 D:TRP131 4.0 15.0 1.0
CB D:ASP163 4.2 12.8 1.0
ND1 D:HIS78 4.2 16.7 1.0
ND1 D:HIS30 4.2 19.5 1.0
CG D:HIS30 4.3 18.5 1.0
CG D:HIS78 4.3 17.5 1.0
ND1 D:HIS167 4.4 12.1 1.0
CB D:TRP165 4.4 11.4 1.0
CG D:HIS167 4.4 12.2 1.0
CG D:TRP165 4.6 11.2 1.0
CH2 D:TRP131 4.6 17.9 1.0
NE2 D:GLN74 4.6 16.2 1.0
CE2 D:TRP131 4.7 14.5 1.0
CD1 D:TRP165 4.8 12.1 1.0
CE2 D:TYR38 4.9 20.2 1.0
NE1 D:TRP131 4.9 13.8 1.0

Reference:

E.Mendoza Rengifo, R.C.Garratt, H.M.Pereira, J.R.S.Ferreira Jr.. Crystal Structure of Mn Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei To Be Published.
Page generated: Sun Oct 6 04:01:13 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy