Atomistry » Manganese » PDB 6bh5-6dk4 » 6cx8
Atomistry »
  Manganese »
    PDB 6bh5-6dk4 »
      6cx8 »

Manganese in PDB 6cx8: Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.

Enzymatic activity of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.

All present enzymatic activity of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.:
2.3.1.57;

Protein crystallography data

The structure of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions., PDB code: 6cx8 was solved by E.V.Filippova, G.Minasov, O.Kiryukhina, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.41
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.645, 135.267, 73.675, 90.00, 118.58, 90.00
R / Rfree (%) 17.1 / 21.3

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. (pdb code 6cx8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions., PDB code: 6cx8:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 6cx8

Go back to Manganese Binding Sites List in 6cx8
Manganese binding site 1 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:53.1
occ:1.00
 OE1 B:GLU33 2.2 49.3 1.0
OE1 A:GLU33 2.2 52.2 1.0
OE2 A:GLU33 2.3 55.1 1.0
OE2 B:GLU75 2.3 46.6 1.0
OE1 A:GLU75 2.3 55.8 1.0
OE1 B:GLU75 2.3 50.9 1.0
OE2 A:GLU75 2.4 54.6 1.0
OE2 B:GLU33 2.5 50.0 1.0
CD A:GLU33 2.6 44.2 1.0
CD B:GLU33 2.7 40.7 1.0
CD B:GLU75 2.7 37.6 1.0
CD A:GLU75 2.7 43.4 1.0
O A:HOH325 3.9 57.9 1.0
CG A:GLU33 4.1 44.5 1.0
CG B:GLU33 4.1 38.2 1.0
O B:HOH327 4.2 58.0 1.0
CG B:GLU75 4.2 36.9 1.0
CG A:GLU75 4.2 44.2 1.0
O B:HOH331 4.5 58.0 1.0
O A:HOH302 4.9 38.6 1.0

Manganese binding site 2 out of 3 in 6cx8

Go back to Manganese Binding Sites List in 6cx8
Manganese binding site 2 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn201

b:52.2
occ:1.00
 OE2 C:GLU75 2.2 49.0 1.0
OE1 D:GLU33 2.3 54.4 1.0
OE2 D:GLU33 2.3 57.3 1.0
OE1 C:GLU33 2.3 51.4 1.0
OE1 D:GLU75 2.3 55.7 1.0
OE1 C:GLU75 2.3 50.6 1.0
OE2 D:GLU75 2.4 53.7 1.0
OE2 C:GLU33 2.4 49.7 1.0
CD D:GLU33 2.6 49.9 1.0
CD C:GLU75 2.6 45.5 1.0
CD C:GLU33 2.7 42.1 1.0
CD D:GLU75 2.7 39.8 1.0
CG D:GLU33 4.1 46.8 1.0
CG C:GLU75 4.2 47.7 1.0
CG C:GLU33 4.2 40.4 1.0
CG D:GLU75 4.2 40.8 1.0
O C:HOH307 4.7 40.0 1.0
O D:HOH312 4.7 41.5 1.0
O D:HOH326 4.8 49.6 1.0

Manganese binding site 3 out of 3 in 6cx8

Go back to Manganese Binding Sites List in 6cx8
Manganese binding site 3 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn201

b:62.6
occ:1.00
 OE2 E:GLU75 2.0 69.5 1.0
OE1 F:GLU33 2.3 74.8 1.0
OE1 E:GLU33 2.3 54.3 1.0
OE1 F:GLU75 2.3 56.9 1.0
OE1 E:GLU75 2.3 66.2 1.0
OE2 F:GLU33 2.3 65.1 1.0
CD E:GLU75 2.5 49.2 1.0
OE2 F:GLU75 2.6 72.5 1.0
CD F:GLU33 2.6 60.8 1.0
OE2 E:GLU33 2.7 55.0 1.0
CD F:GLU75 2.8 56.7 1.0
CD E:GLU33 2.8 50.9 1.0
O E:HOH301 3.0 82.9 1.0
CG E:GLU75 4.0 52.5 1.0
O E:HOH306 4.1 57.7 1.0
CG F:GLU33 4.1 55.5 1.0
O E:HOH320 4.2 61.1 1.0
CG F:GLU75 4.3 51.6 1.0
CG E:GLU33 4.3 52.6 1.0
O E:HOH310 4.8 44.0 1.0
CB E:GLU75 4.8 44.1 1.0

Reference:

E.V.Filippova, G.Minasov, O.Kiryukhina, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. To Be Published.
Page generated: Sun Oct 6 04:01:13 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy