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Manganese in PDB 6cx8: Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.

Enzymatic activity of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.

All present enzymatic activity of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.:
2.3.1.57;

Protein crystallography data

The structure of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions., PDB code: 6cx8 was solved by E.V.Filippova, G.Minasov, O.Kiryukhina, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.41
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.645, 135.267, 73.675, 90.00, 118.58, 90.00
R / Rfree (%) 17.1 / 21.3

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. (pdb code 6cx8). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions., PDB code: 6cx8:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 6cx8

Go back to Manganese Binding Sites List in 6cx8
Manganese binding site 1 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn201

b:53.1
occ:1.00
 OE1 B:GLU33 2.2 49.3 1.0
OE1 A:GLU33 2.2 52.2 1.0
OE2 A:GLU33 2.3 55.1 1.0
OE2 B:GLU75 2.3 46.6 1.0
OE1 A:GLU75 2.3 55.8 1.0
OE1 B:GLU75 2.3 50.9 1.0
OE2 A:GLU75 2.4 54.6 1.0
OE2 B:GLU33 2.5 50.0 1.0
CD A:GLU33 2.6 44.2 1.0
CD B:GLU33 2.7 40.7 1.0
CD B:GLU75 2.7 37.6 1.0
CD A:GLU75 2.7 43.4 1.0
O A:HOH325 3.9 57.9 1.0
CG A:GLU33 4.1 44.5 1.0
CG B:GLU33 4.1 38.2 1.0
O B:HOH327 4.2 58.0 1.0
CG B:GLU75 4.2 36.9 1.0
CG A:GLU75 4.2 44.2 1.0
O B:HOH331 4.5 58.0 1.0
O A:HOH302 4.9 38.6 1.0

Manganese binding site 2 out of 3 in 6cx8

Go back to Manganese Binding Sites List in 6cx8
Manganese binding site 2 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn201

b:52.2
occ:1.00
 OE2 C:GLU75 2.2 49.0 1.0
OE1 D:GLU33 2.3 54.4 1.0
OE2 D:GLU33 2.3 57.3 1.0
OE1 C:GLU33 2.3 51.4 1.0
OE1 D:GLU75 2.3 55.7 1.0
OE1 C:GLU75 2.3 50.6 1.0
OE2 D:GLU75 2.4 53.7 1.0
OE2 C:GLU33 2.4 49.7 1.0
CD D:GLU33 2.6 49.9 1.0
CD C:GLU75 2.6 45.5 1.0
CD C:GLU33 2.7 42.1 1.0
CD D:GLU75 2.7 39.8 1.0
CG D:GLU33 4.1 46.8 1.0
CG C:GLU75 4.2 47.7 1.0
CG C:GLU33 4.2 40.4 1.0
CG D:GLU75 4.2 40.8 1.0
O C:HOH307 4.7 40.0 1.0
O D:HOH312 4.7 41.5 1.0
O D:HOH326 4.8 49.6 1.0

Manganese binding site 3 out of 3 in 6cx8

Go back to Manganese Binding Sites List in 6cx8
Manganese binding site 3 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn201

b:62.6
occ:1.00
 OE2 E:GLU75 2.0 69.5 1.0
OE1 F:GLU33 2.3 74.8 1.0
OE1 E:GLU33 2.3 54.3 1.0
OE1 F:GLU75 2.3 56.9 1.0
OE1 E:GLU75 2.3 66.2 1.0
OE2 F:GLU33 2.3 65.1 1.0
CD E:GLU75 2.5 49.2 1.0
OE2 F:GLU75 2.6 72.5 1.0
CD F:GLU33 2.6 60.8 1.0
OE2 E:GLU33 2.7 55.0 1.0
CD F:GLU75 2.8 56.7 1.0
CD E:GLU33 2.8 50.9 1.0
O E:HOH301 3.0 82.9 1.0
CG E:GLU75 4.0 52.5 1.0
O E:HOH306 4.1 57.7 1.0
CG F:GLU33 4.1 55.5 1.0
O E:HOH320 4.2 61.1 1.0
CG F:GLU75 4.3 51.6 1.0
CG E:GLU33 4.3 52.6 1.0
O E:HOH310 4.8 44.0 1.0
CB E:GLU75 4.8 44.1 1.0

Reference:

E.V.Filippova, G.Minasov, O.Kiryukhina, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Vibrio Cholerae in Complex with Manganese Ions. To Be Published.
Page generated: Sun Oct 6 04:01:13 2024

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