Manganese in PDB 6bej: Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri

All present enzymatic activity of Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri:
1.15.1.1;

The structure of Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri, PDB code: 6bej was solved by L.S.Goto, A.V.Alexandrino, C.M.Pereira, D.C.Mendoca, D.A.Leonardo, H.M.Pereira, R.C.Garratt, M.T.M.Novo-Mansur, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.98 / 1.89
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.670, 72.466, 87.670, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 25.1

The binding sites of Manganese atom in the Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri (pdb code 6bej). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri, PDB code: 6bej:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri within 5.0Å range: probe atom residue distance (Å) B Occ E:Mn301 b:21.6 occ:1.00 OD2 E:ASP164 2.0 24.0 1.0 O E:HOH411 2.1 32.4 1.0 NE2 E:HIS27 2.1 26.1 1.0 O E:HOH453 2.1 21.0 1.0 NE2 E:HIS81 2.1 22.7 1.0 NE2 E:HIS168 2.2 24.8 1.0 CE1 E:HIS27 3.0 25.0 1.0 CE1 E:HIS81 3.1 22.3 1.0 CD2 E:HIS168 3.1 25.0 1.0 CG E:ASP164 3.1 20.4 1.0 CD2 E:HIS27 3.1 24.8 1.0 CD2 E:HIS81 3.2 21.8 1.0 CE1 E:HIS168 3.2 23.7 1.0 OD1 E:ASP164 3.6 20.4 1.0 ND1 E:HIS27 4.1 24.7 1.0 ND1 E:HIS81 4.2 21.7 1.0 CG E:HIS27 4.2 26.0 1.0 CG E:HIS81 4.3 22.4 1.0 ND1 E:HIS168 4.3 22.3 1.0 CG E:HIS168 4.3 23.4 1.0 CB E:ASP164 4.4 21.2 1.0 CZ2 E:TRP130 4.6 22.9 1.0 NE2 E:GLN149 4.6 18.8 1.0 CB E:TRP166 4.6 21.3 1.0 CG E:TRP166 4.8 20.0 1.0 CB E:ALA169 4.9 17.9 1.0

Manganese binding site 2 out of 2 in the Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Manganese Superoxide Dismutase From Xanthomonas Citri within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn301 b:23.7 occ:1.00 OD2 A:ASP164 2.0 34.0 1.0 NE2 A:HIS168 2.1 28.0 1.0 NE2 A:HIS27 2.1 32.0 1.0 NE2 A:HIS81 2.1 29.2 1.0 O A:HOH448 2.2 20.5 1.0 CE1 A:HIS168 3.0 26.0 1.0 CE1 A:HIS27 3.0 30.4 1.0 CD2 A:HIS81 3.1 28.1 1.0 CE1 A:HIS81 3.1 28.4 1.0 CG A:ASP164 3.1 33.0 1.0 CD2 A:HIS27 3.1 28.6 1.0 CD2 A:HIS168 3.2 26.1 1.0 OD1 A:ASP164 3.6 32.8 1.0 ND1 A:HIS27 4.1 31.5 1.0 ND1 A:HIS168 4.1 23.4 1.0 ND1 A:HIS81 4.2 26.0 1.0 CG A:HIS27 4.2 29.1 1.0 CG A:HIS81 4.2 27.8 1.0 CG A:HIS168 4.3 24.2 1.0 CB A:ASP164 4.3 30.2 1.0 CZ2 A:TRP130 4.6 30.8 1.0 CB A:TRP166 4.6 21.9 1.0 NE2 A:GLN149 4.6 24.7 1.0 CG A:TRP166 4.7 22.9 1.0 CB A:ALA169 4.9 24.4 1.0 CD1 A:TRP166 5.0 24.3 1.0

D.A.L.Cabrejos, A.V.Alexandrino, C.M.Pereira, D.C.Mendonca, H.D.Pereira, M.T.M.Novo-Mansur, R.C.Garratt, L.S.Goto. Structural Characterization of A Pathogenicity-Related Superoxide Dismutase Codified By A Probably Essential Gene in Xanthomonas Citri Subsp. Citri. Plos One V. 14 09988 2019.
ISSN: ESSN 1932-6203
PubMed: 30615696
DOI: 10.1371/JOURNAL.PONE.0209988