Manganese in PDB 6ae9: X-Ray Structure of the Photosystem II Phosphatase Pbcp

All present enzymatic activity of X-Ray Structure of the Photosystem II Phosphatase Pbcp:
3.1.3.16;

The structure of X-Ray Structure of the Photosystem II Phosphatase Pbcp, PDB code: 6ae9 was solved by X.Y.Liu, J.C.Chai, X.M.Ou, Z.F.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.70 / 1.47
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	166.407, 166.407, 46.983, 90.00, 90.00, 120.00
R / Rfree (%)	16 / 17.9

The structure of X-Ray Structure of the Photosystem II Phosphatase Pbcp also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

The binding sites of Manganese atom in the X-Ray Structure of the Photosystem II Phosphatase Pbcp (pdb code 6ae9). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the X-Ray Structure of the Photosystem II Phosphatase Pbcp, PDB code: 6ae9:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the X-Ray Structure of the Photosystem II Phosphatase Pbcp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structure of the Photosystem II Phosphatase Pbcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn406 b:13.7 occ:0.70 OD1 A:ASP210 2.0 14.0 1.0 OD2 A:ASP79 2.1 12.6 1.0 O A:HOH525 2.1 14.4 1.0 OD1 A:ASN283 2.1 16.6 1.0 O2 A:PO4404 2.2 15.7 1.0 O4 A:PO4404 2.2 14.1 1.0 P A:PO4404 2.8 14.3 1.0 CG A:ASP79 3.1 11.9 1.0 CG A:ASP210 3.1 14.7 1.0 CG A:ASN283 3.2 17.0 1.0 OD1 A:ASP79 3.3 13.8 1.0 OD2 A:ASP210 3.6 16.9 1.0 ND2 A:ASN283 3.7 16.7 1.0 MG A:MG402 3.7 13.6 1.0 MG A:MG401 3.8 12.7 1.0 O1 A:PO4404 3.8 14.1 1.0 N A:GLY211 3.8 13.1 1.0 O3 A:PO4404 3.9 16.2 1.0 O A:HOH541 4.1 15.1 1.0 NZ A:LYS281 4.1 22.7 1.0 O A:HOH616 4.2 13.8 1.0 O A:HOH579 4.2 16.0 1.0 OD1 A:ASP63 4.3 14.3 1.0 O A:HOH521 4.4 14.3 1.0 O A:ASP284 4.4 13.1 1.0 CB A:ASP79 4.4 12.4 1.0 CB A:ASP210 4.4 13.2 1.0 N A:ASP210 4.5 12.9 1.0 CA A:GLY211 4.5 13.5 1.0 O A:HOH630 4.5 15.1 1.0 CB A:ASN283 4.5 15.3 1.0 C A:ASP210 4.5 13.2 1.0 CA A:ASP210 4.7 13.1 1.0 O A:HOH596 4.7 18.8 1.0 CB A:SER209 4.7 12.0 1.0 OG A:SER209 4.9 13.0 1.0 O A:HOH613 5.0 16.5 1.0

Manganese binding site 2 out of 2 in the X-Ray Structure of the Photosystem II Phosphatase Pbcp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of X-Ray Structure of the Photosystem II Phosphatase Pbcp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn407 b:11.4 occ:0.70 OD1 B:ASP210 2.0 10.9 1.0 O B:HOH550 2.1 11.8 1.0 OD2 B:ASP79 2.1 11.0 1.0 OD1 B:ASN283 2.1 15.4 1.0 O1 B:PO4404 2.2 12.4 1.0 O2 B:PO4404 2.3 12.5 1.0 P B:PO4404 2.8 12.4 1.0 CG B:ASP79 3.1 9.6 1.0 CG B:ASP210 3.1 12.9 1.0 CG B:ASN283 3.2 11.0 1.0 OD1 B:ASP79 3.4 11.4 1.0 OD2 B:ASP210 3.6 13.3 1.0 ND2 B:ASN283 3.6 14.7 1.0 MG B:MG402 3.7 11.2 1.0 MG B:MG401 3.8 10.8 1.0 O4 B:PO4404 3.8 12.1 1.0 O3 B:PO4404 3.8 14.2 1.0 N B:GLY211 3.9 10.3 1.0 O B:HOH574 4.0 11.7 1.0 NZ B:LYS281 4.2 20.9 1.0 O B:HOH566 4.2 13.5 1.0 O B:HOH637 4.2 12.6 1.0 OD1 B:ASP63 4.3 11.5 1.0 O B:HOH563 4.4 12.2 1.0 CB B:ASP79 4.4 10.0 1.0 O B:ASP284 4.4 11.3 1.0 CB B:ASP210 4.4 9.8 1.0 CB B:ASN283 4.5 12.9 1.0 N B:ASP210 4.5 10.5 1.0 O B:HOH675 4.5 12.1 1.0 C B:ASP210 4.6 8.9 1.0 CA B:GLY211 4.6 11.1 1.0 CA B:ASP210 4.7 10.6 1.0 O B:HOH581 4.7 17.3 1.0 CB B:SER209 4.8 11.3 1.0 OG B:SER209 4.9 11.5 1.0 O B:HOH649 4.9 15.1 1.0

X.Liu, J.Chai, X.Ou, M.Li, Z.Liu. Structural Insights Into Substrate Selectivity, Catalytic Mechanism, and Redox Regulation of Rice Photosystem II Core Phosphatase. Mol Plant V. 12 86 2019.
ISSN: ESSN 1752-9867
PubMed: 30453087
DOI: 10.1016/J.MOLP.2018.11.006