Manganese in PDB 6aci: Crystal Structure of Epec Effector Nleb in Complex with Fadd Death Domain

The structure of Crystal Structure of Epec Effector Nleb in Complex with Fadd Death Domain, PDB code: 6aci was solved by J.Ding, F.Shao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.59 / 1.87
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	84.590, 84.590, 145.881, 90.00, 90.00, 120.00
R / Rfree (%)	16.4 / 20.9

The binding sites of Manganese atom in the Crystal Structure of Epec Effector Nleb in Complex with Fadd Death Domain (pdb code 6aci). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Epec Effector Nleb in Complex with Fadd Death Domain, PDB code: 6aci:

Manganese binding site 1 out of 1 in the Crystal Structure of Epec Effector Nleb in Complex with Fadd Death Domain


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Epec Effector Nleb in Complex with Fadd Death Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn402 b:19.0 occ:1.00 OD1 A:ASN320 2.1 22.2 1.0 O1A A:UDP401 2.1 16.9 1.0 O A:HOH543 2.1 19.3 1.0 O1B A:UDP401 2.2 17.5 1.0 OD2 A:ASP223 2.2 17.9 1.0 OG A:SER322 2.3 21.6 1.0 CG A:ASP223 3.1 19.9 1.0 CG A:ASN320 3.3 20.1 1.0 PB A:UDP401 3.3 24.1 1.0 CB A:SER322 3.3 22.4 1.0 PA A:UDP401 3.3 20.5 1.0 OD1 A:ASP223 3.4 16.5 1.0 O3A A:UDP401 3.6 20.7 1.0 CA A:ASN320 4.1 22.9 1.0 O A:HOH579 4.1 24.4 1.0 CB A:ASN320 4.1 22.2 1.0 N A:SER322 4.2 20.3 1.0 ND2 A:ASN320 4.2 25.5 1.0 O2B A:UDP401 4.2 22.0 1.0 O2A A:UDP401 4.2 22.9 1.0 O3B A:UDP401 4.3 27.0 1.0 CA A:SER322 4.3 16.5 1.0 O A:HOH633 4.3 18.9 1.0 OD2 A:ASP221 4.3 17.8 1.0 C A:ASN320 4.3 22.8 1.0 CB A:ASP223 4.4 21.5 1.0 O A:HOH807 4.4 37.2 1.0 O5' A:UDP401 4.5 21.1 1.0 O A:ASN320 4.5 20.0 1.0 C5' A:UDP401 4.6 14.8 1.0 N A:THR321 4.8 20.4 1.0 C A:SER322 4.9 14.5 1.0 OH A:TYR72 4.9 24.0 1.0 N A:MET323 4.9 16.1 1.0

J.Ding, X.Pan, L.Du, Q.Yao, J.Xue, H.Yao, D.C.Wang, S.Li, F.Shao. Structural and Functional Insights Into Host Death Domains Inactivation By the Bacterial Arginine Glcnacyltransferase Effector. Mol.Cell V. 74 922 2019.
ISSN: ISSN 1097-2765
PubMed: 30979585
DOI: 10.1016/J.MOLCEL.2019.03.028