Manganese in PDB 5z5n: Crystal Structure of Cona-R1M

The structure of Crystal Structure of Cona-R1M, PDB code: 5z5n was solved by G.S.Chen, J.H.Gan, R.T.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	84.59 / 2.04
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.210, 118.820, 120.450, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 22.5

The structure of Crystal Structure of Cona-R1M also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Manganese atom in the Crystal Structure of Cona-R1M (pdb code 5z5n). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of Cona-R1M, PDB code: 5z5n:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in the Crystal Structure of Cona-R1M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Cona-R1M within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn302 b:24.2 occ:1.00 O A:HOH410 2.0 19.1 1.0 OD2 A:ASP10 2.1 17.9 1.0 OD1 A:ASP19 2.2 18.7 1.0 O A:HOH425 2.2 22.9 1.0 OE2 A:GLU8 2.2 21.3 1.0 NE2 A:HIS24 2.3 31.0 1.0 CG A:ASP19 3.1 25.0 1.0 CE1 A:HIS24 3.1 31.7 1.0 CG A:ASP10 3.1 20.3 1.0 CD A:GLU8 3.2 23.2 1.0 CD2 A:HIS24 3.3 29.8 1.0 OE1 A:GLU8 3.5 21.2 1.0 OD2 A:ASP19 3.5 23.2 1.0 CB A:ASP10 3.6 22.1 1.0 O A:HOH449 4.0 20.4 1.0 OG A:SER34 4.0 26.4 1.0 CA A:CA301 4.1 26.7 1.0 OD1 A:ASP10 4.2 21.1 1.0 ND1 A:HIS24 4.3 31.5 1.0 CB A:ASP19 4.3 27.3 1.0 CG A:HIS24 4.4 30.1 1.0 CG A:GLU8 4.6 20.3 1.0 O A:VAL32 4.6 21.6 1.0 CA A:ASP19 4.7 28.6 1.0

Manganese binding site 2 out of 4 in the Crystal Structure of Cona-R1M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Cona-R1M within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn302 b:21.2 occ:1.00 O B:HOH428 2.1 21.4 1.0 OD2 B:ASP10 2.2 18.9 1.0 O B:HOH417 2.2 20.0 1.0 OD1 B:ASP19 2.2 21.8 1.0 OE2 B:GLU8 2.2 17.5 1.0 NE2 B:HIS24 2.3 25.0 1.0 CG B:ASP19 3.1 20.6 1.0 CG B:ASP10 3.2 18.0 1.0 CD B:GLU8 3.2 17.4 1.0 CE1 B:HIS24 3.2 25.4 1.0 CD2 B:HIS24 3.3 24.3 1.0 OD2 B:ASP19 3.5 20.3 1.0 OE1 B:GLU8 3.5 17.5 1.0 CB B:ASP10 3.6 17.1 1.0 O B:HOH439 3.9 12.7 1.0 CA B:CA301 4.2 21.2 1.0 OG B:SER34 4.2 21.5 1.0 CB B:ASP19 4.2 23.0 1.0 OD1 B:ASP10 4.3 21.3 1.0 ND1 B:HIS24 4.4 25.0 1.0 CG B:HIS24 4.4 24.3 1.0 CG B:GLU8 4.6 18.1 1.0 O B:VAL32 4.6 23.1 1.0 CA B:ASP19 4.6 24.0 1.0

Manganese binding site 3 out of 4 in the Crystal Structure of Cona-R1M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Cona-R1M within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn302 b:23.1 occ:1.00 OD2 C:ASP10 2.0 20.3 1.0 O C:HOH407 2.1 18.9 1.0 O C:HOH456 2.2 19.8 1.0 OE2 C:GLU8 2.2 19.3 1.0 OD1 C:ASP19 2.3 21.3 1.0 NE2 C:HIS24 2.4 26.5 1.0 CG C:ASP10 3.1 20.6 1.0 CG C:ASP19 3.1 23.9 1.0 CD C:GLU8 3.2 20.5 1.0 CE1 C:HIS24 3.2 24.9 1.0 CD2 C:HIS24 3.4 23.6 1.0 OD2 C:ASP19 3.4 25.2 1.0 CB C:ASP10 3.6 21.3 1.0 OE1 C:GLU8 3.6 21.6 1.0 O C:HOH438 4.0 21.7 1.0 CA C:CA301 4.1 24.2 1.0 OG C:SER34 4.1 18.7 1.0 OD1 C:ASP10 4.2 20.1 1.0 CB C:ASP19 4.4 25.6 1.0 ND1 C:HIS24 4.4 24.6 1.0 O C:VAL32 4.5 22.1 1.0 CG C:HIS24 4.5 23.9 1.0 CG C:GLU8 4.6 19.4 1.0 CA C:ASP19 4.7 25.2 1.0

Manganese binding site 4 out of 4 in the Crystal Structure of Cona-R1M


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Cona-R1M within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn302 b:28.9 occ:1.00 OD2 D:ASP10 1.2 19.6 1.0 O D:HOH407 2.1 26.4 1.0 O D:HOH406 2.1 25.3 1.0 NE2 D:HIS24 2.1 28.2 1.0 OE2 D:GLU8 2.3 22.1 1.0 OD1 D:ASP19 2.4 26.4 1.0 CG D:ASP10 2.5 22.9 1.0 CE1 D:HIS24 3.0 30.2 1.0 CD2 D:HIS24 3.2 27.9 1.0 CG D:ASP19 3.2 31.4 1.0 CD D:GLU8 3.2 25.0 1.0 CB D:ASP10 3.4 24.5 1.0 OE1 D:GLU8 3.4 23.0 1.0 OD1 D:ASP10 3.5 20.5 1.0 OD2 D:ASP19 3.6 27.2 1.0 O D:HOH453 3.8 25.4 1.0 OG D:SER34 4.1 31.0 1.0 ND1 D:HIS24 4.2 26.2 1.0 CA D:CA301 4.2 28.1 1.0 CG D:HIS24 4.3 27.4 1.0 O D:VAL32 4.3 31.3 1.0 CB D:ASP19 4.4 33.4 1.0 CG D:GLU8 4.6 22.3 1.0 CA D:ASP19 4.7 36.6 1.0 CA D:ASP10 4.9 24.6 1.0

G.S.Chen, J.H.Gan, R.T.Hu. Crystal Structure of Cona-R1M (Only Mannose) To Be Published.